Locus 4136

Sequence ID X_DroMel_CAF1
Location 10,865,872 – 10,865,981
Length 109
Max. P 0.615723
window6797

overview

Window 7

Location 10,865,872 – 10,865,981
Length 109
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.40
Mean single sequence MFE -29.62
Consensus MFE -22.75
Energy contribution -24.50
Covariance contribution 1.75
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.77
SVM decision value 0.17
SVM RNA-class probability 0.615723
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10865872 109 - 22224390
UUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGAUAGGGAUUGGGAUCGGGAUUGCGAUUGGGCGGAAGCCCGAUGGUAUGGAA-----------
((.(((((((((((...)))))))...(((......))))))).))(((..((((..(((....)))..))))..)))(((.(((((((....))))))).))).....----------- ( -34.10)
>DroSec_CAF1 19522 103 - 1
AUGCGGCAUAUUUCAUAGAGAUAAAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGA------UUGGGAUUGGGUUUGCGUUUGGGCGGAAGCCCGAUGGUAUGGAA-----------
(((((((.((((((...))))))....(((......)))))).(((.((((..(((...------.)))..)))).)))))))((((((....))))))..........----------- ( -26.30)
>DroSim_CAF1 21038 103 - 1
AUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGA------UUGGGAUUGGGUUUGCGUUUGGGCGGAAGCCCGAUGGUAUGGAA-----------
((((((((((((((...)))))))...(((......)))))).(((.((((..(((...------.)))..)))).)))))))((((((....))))))..........----------- ( -27.30)
>DroYak_CAF1 19560 114 - 1
UUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCAGCA------UCGGGAUCGGGAUUGGGAUGGUGCGGAAGCCCGAUGGAAUGGAACCUAGUAAAGU
((.(((((((((((...)))))))...(((......))))))).))...((..(((.((------(((((.((.(.(((.....))).).))..)))))))...)))..))......... ( -30.80)
>consensus
AUGCGGCAUAUUUCAUAGAGAUAUAUUUACAAUAAAGUGGCCGGAAGUCGGGAUCGGGA______UUGGGAUCGGGAUUGCGAUUGGGCGGAAGCCCGAUGGUAUGGAA___________
.(.(((((((((((...)))))))...(((......))))))).)..((((..((((........))))..))))...(((.(((((((....))))))).)))................ (-22.75 = -24.50 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:16 2006