Locus 4131

Sequence ID X_DroMel_CAF1
Location 10,861,441 – 10,861,543
Length 102
Max. P 0.511528
window6787

overview

Window 7

Location 10,861,441 – 10,861,543
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 93.31
Mean single sequence MFE -22.80
Consensus MFE -19.17
Energy contribution -19.18
Covariance contribution 0.00
Combinations/Pair 1.04
Mean z-score -1.48
Structure conservation index 0.84
SVM decision value -0.04
SVM RNA-class probability 0.511528
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10861441 102 - 22224390
CGCACACACAAACACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGAAAUAAAAUAAAUAAGGGAAAUGUGCA
.(((((((((......))))).(((((.((....)).))).(((((((.((((((........))))))...)))))))..........))......)))). ( -24.80)
>DroSec_CAF1 15164 92 - 1
CAC----------ACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGGAAUAAAAUAAAUAAGGGAAAUGUGCA
..(----------((((((((....)))).(((((......(((((((.((((((........))))))...)))))))......))))).....))))).. ( -20.10)
>DroSim_CAF1 17194 98 - 1
CACACACA----CACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGGAAUAAAAUAAAUAAGGGAAAUGUGCA
.(((((..----....)))))....((((((((((......(((((((.((((((........))))))...)))))))......))))......)))))). ( -21.80)
>DroYak_CAF1 15386 96 - 1
CGCACA------CACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGAAAUAAAAUAAAUAAGGGAAAUGUGCA
.(((((------....(((((....)))))(((((......(((((((.((((((........))))))...)))))))......)))))......))))). ( -24.50)
>consensus
CACACA______CACAUGUGUACUGGCGCAUUAUUGAGUCGAUUUUGCGGUUUUUGGGCAAAAAGAAGCACAGCGAAAUAAAAUAAAUAAGGGAAAUGUGCA
............(((((((((....)))).(((((......(((((((.((((((........))))))...)))))))......))))).....))))).. (-19.17 = -19.18 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:06 2006