Locus 4121

Sequence ID X_DroMel_CAF1
Location 10,852,011 – 10,852,101
Length 90
Max. P 0.986047
window6770

overview

Window 0

Location 10,852,011 – 10,852,101
Length 90
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 80.10
Mean single sequence MFE -28.49
Consensus MFE -17.72
Energy contribution -19.53
Covariance contribution 1.81
Combinations/Pair 1.05
Mean z-score -2.70
Structure conservation index 0.62
SVM decision value 2.03
SVM RNA-class probability 0.986047
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10852011 90 - 22224390
GCAGAUUCUGAUUCUGAUUCCGAUUCAGAUU------------------CAGAUACAGAUACGUAUACGAAUUCCGGAUCUGAAUCCAAGCGCAGAGUCACACACAAU
...(((((((.....(((((.(((((.((((------------------(..((((......))))..)))))..))))).)))))......)))))))......... ( -26.20)
>DroSec_CAF1 5909 98 - 1
GCAGAUUCUGAUUCGGAUUCCGAUUCGGAUUCAG------AUUCAGAUACAGAUACAGAUACGGAUACGAAUUCCGGGUCUGAAUCCAAGCGCAGAGUCA----CAAU
...(((((((....((((((.(((((((((((..------((((..................))))..))).)))))))).)))))).....))))))).----.... ( -32.27)
>DroSim_CAF1 6002 104 - 1
GCAGAUUCUGAUUCGGAUUCCGAUUCGGAUUCAGAUUCAGAUUCAGAUACAGAUACAGAUACGGAUACGAAUUCCGGGUCUGAAUCCAAGCGCAGAGUCA----CAAU
...(((((((..((((...))))...((((((((((((....((.......)).........(((.......))))))))))))))).....))))))).----.... ( -33.00)
>DroYak_CAF1 6043 94 - 1
----UUUCAGUUGCAGAUUCCGAUACUGAUUCCG------AUUCAGAUACAGAUACAGAUUCAGAUACGAAUUCCGAGUCGGAAUCCAAGCGCAGAGUCA----CAAU
----.....((((..(((((((.....(((((((------((((.((...........((((......)))))).)))))))))))....))..))))).----)))) ( -22.50)
>consensus
GCAGAUUCUGAUUCGGAUUCCGAUUCGGAUUCAG______AUUCAGAUACAGAUACAGAUACGGAUACGAAUUCCGGGUCUGAAUCCAAGCGCAGAGUCA____CAAU
...(((((((....((((((.((((((((...........................................)))))))).)))))).....)))))))......... (-17.72 = -19.53 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:50 2006