| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,851,444 – 10,851,564 |
| Length | 120 |
| Max. P | 0.845476 |
| Location | 10,851,444 – 10,851,564 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.21 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -21.23 |
| Energy contribution | -21.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10851444 120 + 22224390 ACUGCCACACACACACACGCACAGAUAUUUUCUCCCAACAACUCGCUUUCACUCUGGCAAAAGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUACCGCA ..................((..(((.....))).......((.((((((.((.(((.(((((((...(((...(((.....)))..)))..)))))))...)))))))))))))...)). ( -24.80) >DroSec_CAF1 5379 102 + 1 ACUGCCACACACACACACGCACAGAUAUUU------------------UCACUCUGGCAAAAGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUAACGCA ..((((.......................(------------------(((((.(((((...(((....)))...))))).))))))(((.(.....).))).))))..(((....))). ( -22.10) >DroSim_CAF1 5479 95 + 1 ACUGCCACACACAC------ACAGAUAUUU------------------UCACUCUGGCAU-AGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUAACGCA ..((((........------.........(------------------(((((.((((((-(((.....))))..))))).))))))(((.(.....).))).))))..(((....))). ( -22.40) >consensus ACUGCCACACACACACACGCACAGAUAUUU__________________UCACUCUGGCAAAAGGACUGCUCUAACUGCUAAAGUGAAGUUACUUUUUGAAACAGGUAAAGCGGUAACGCA ..((((..........................................(((((.(((((...(((....)))...))))).))))).(((.(.....).))).))))..(((....))). (-21.23 = -21.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:49 2006