| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,841,490 – 10,841,603 |
| Length | 113 |
| Max. P | 0.895081 |
| Location | 10,841,490 – 10,841,603 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 95.52 |
| Mean single sequence MFE | -38.73 |
| Consensus MFE | -32.98 |
| Energy contribution | -34.98 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.895081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10841490 113 + 22224390 UGGAGCUGAAAGUUGUUUGAGCAGUUCAUGUGGAUGUGGGUGGAUUGGGUGUGUGGUCUAGCCAGGACUUCAGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ..((((((..((....))...)))))).(((..(((..(((((((((((((.((.((..((((((..(....)..)))))).)).)).)))))).)))))))..).))..))) ( -38.40) >DroSec_CAF1 20290 109 + 1 UGGAGCUGAAAGUUGAGUGAGCAGU---UGUGGAUGUGGGUGGAU-GGGUGUGUGGUCUAGCCAGGACUUCGGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ................((..(((((---.(((((((((....(((-((((.....((..((((((..(....)..)))))).)).))))))))))))))))..)))))..)). ( -39.00) >DroSim_CAF1 1152 109 + 1 UGGAGCUGAAAGUUGGGUGAGCAGU---UGUGGAUGUGGGUGGAU-GGGUGUGUGGUCUAGCCAGGACUUCGGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ................((..(((((---.(((((((((....(((-((((.....((..((((((..(....)..)))))).)).))))))))))))))))..)))))..)). ( -38.80) >consensus UGGAGCUGAAAGUUGAGUGAGCAGU___UGUGGAUGUGGGUGGAU_GGGUGUGUGGUCUAGCCAGGACUUCGGGACUGGCUUGCAACUCAUUCAUAUUCAUUUGCUGUAAACA ....................(((((....((((((((((((((.......((...((..((((((..(....)..)))))).)).))))))))))))))))..)))))..... (-32.98 = -34.98 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:29 2006