Locus 4102

Sequence ID X_DroMel_CAF1
Location 10,831,149 – 10,831,257
Length 108
Max. P 0.862233
window6742

overview

Window 2

Location 10,831,149 – 10,831,257
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 91.36
Mean single sequence MFE -41.30
Consensus MFE -34.60
Energy contribution -34.80
Covariance contribution 0.20
Combinations/Pair 1.03
Mean z-score -2.60
Structure conservation index 0.84
SVM decision value 0.83
SVM RNA-class probability 0.862233
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10831149 108 - 22224390
CGGUCAGCAUGGCAGGCAAAUUUGCCAGCCUGGGCAGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGACGAACAGGACGAACAGGACGAAGGCAUUACGCGCUGAACU
...(((((.((((.((((....)))).((....)).))))((((((.(((...((((....))))(..(.....)..).....)).)...))))))....)))))... ( -39.10)
>DroSim_CAF1 37255 108 - 1
CGGUCAGCGUGGCAGGCAAAUUUGCCAGCCUGGGCAGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGACGAACAGGACAAACAGGACGAAGGCAUUACGCGCUGAACU
...((((((((((.((((....)))).((....)).))).((((((.(((...((((....))))(..(.....)..).....)).)...))))))..)))))))... ( -41.50)
>DroEre_CAF1 54284 99 - 1
CGGUCAGCGUGGCAGGCAAAUUUGCCAGGCCGGGCGGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGA---------CAAACAGGACGAAGGCAUUACGCGCUGAACU
...(((((((((((((((....)))).((((....))))...)))).(((...((((....))))(..---------(.....)..)...))).....)))))))... ( -43.30)
>consensus
CGGUCAGCGUGGCAGGCAAAUUUGCCAGCCUGGGCAGCCAAAUGCCAGCCAAGUGCCAAGUGGCAGGACGAACAGGACAAACAGGACGAAGGCAUUACGCGCUGAACU
...((((((((...(((.....((((......))))))).((((((.(((...((((....))))(..(.....)..).....)).)...)))))).))))))))... (-34.60 = -34.80 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:23 2006