| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,793,929 – 10,794,029 |
| Length | 100 |
| Max. P | 0.725068 |
| Location | 10,793,929 – 10,794,029 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 70.86 |
| Mean single sequence MFE | -20.97 |
| Consensus MFE | -12.47 |
| Energy contribution | -13.03 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10793929 100 + 22224390 CAUUUUAUUAGUUUUUUUUUGCCUACCAAAAGUAUGCAAGAAAUAUUU-----------------UU-UAAGCAUUCAAAGCUCACAAGACAAGCUUGACUGUUUGAUAGUUAAAUAG .((((.((((....((((((((.(((.....))).)))))))).....-----------------.(-((((((.((((.(((.........))))))).))))))))))).)))).. ( -19.10) >DroEre_CAF1 16594 113 + 1 CAU---AUUAUUUGUUUUUUGCCAACCAAAAGUAUGCAAGAAAUAUUUCUCAAUCAUUCACAAGUUU-UCAGCAUUCAAAGCUCGCAAAACAAGCUCGGAUGUUUGAAAGUU-GGCAG ...---.............(((((((...((((((.......)))))).................((-(((((((((..((((.(.....).)))).))))).)))))))))-)))). ( -22.60) >DroYak_CAF1 16806 110 + 1 UGU---AUUAUUUGCUUUUUGCCAACCAAAAGUAUGCAAGAAAAAUUUCCUAAGAAAUCAGAAGUAAAAAAGCAUUCAAAGCUCGCA-----AGUUUGAAUGUUUGAAAGUUAGGAAG .((---(.....)))(((((((..((.....))..)))))))....((((((((....)..........(((((((((((...(...-----.)))))))))))).....))))))). ( -21.20) >consensus CAU___AUUAUUUGUUUUUUGCCAACCAAAAGUAUGCAAGAAAUAUUUC__AA__A_UCA_AAGUUU_UAAGCAUUCAAAGCUCGCAA_ACAAGCUUGAAUGUUUGAAAGUUAGGAAG ...............(((((((..((.....))..)))))))...........................((((((((((.(((.........)))))))))))))............. (-12.47 = -13.03 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:09 2006