Locus 4089

Sequence ID X_DroMel_CAF1
Location 10,786,505 – 10,786,606
Length 101
Max. P 0.516213
window6723

overview

Window 3

Location 10,786,505 – 10,786,606
Length 101
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 75.99
Mean single sequence MFE -37.82
Consensus MFE -19.69
Energy contribution -20.38
Covariance contribution 0.70
Combinations/Pair 1.17
Mean z-score -1.65
Structure conservation index 0.52
SVM decision value -0.03
SVM RNA-class probability 0.516213
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10786505 101 + 22224390
UUGUCGCUUUGGGAUUAGUGGGAGUUG--AGACUUAA--AGAGGUGUUCGUCAAUAGAUGCGCAUCGUACGGUUUCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA
...(((((.................((--(((((...--...(((((.((((....)))).)))))....)))))))......((((((....))))))))---))). ( -34.80)
>DroSec_CAF1 2783 101 + 1
UUGUCGCUUUGUGAUUAGUGGGAGUUG--AGACCUAU--AGCGGGGUUCGUCAAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA
((((((((.(((.....(((((.....--...)))))--.(((..((.((((....)))).))..).(((((((((....))))))))))).))).)))))---))). ( -37.60)
>DroSim_CAF1 2828 101 + 1
UUGUCGCUUUGGGAUUAGUGGGAGUUG--AGACCAAU--AGCGGGGUUCGUCAAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA
((((((((((((..((((......)))--)..)))).--.(((..((.((((....)))).))...((((((((((....)))))))).))..))))))))---))). ( -38.70)
>DroEre_CAF1 9196 103 + 1
AGUUCGUUGGGGGAACCGUGGGAGUUG--AGACCCAUAGAGCGGGGUUCGUCCAUAGAUGCGCAUCGUACGUUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA
..((((((..((((((.(((((.....--...))))).(.(((..((.((((....)))).))..))).))))))).......((((((....))))))))---)))) ( -39.80)
>DroYak_CAF1 9319 103 + 1
AGUUCGCUGGGGCAUCUGUGGGAGUUG--AGACUUGUGGAGUGGGGCUCUUUGAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG---CGGA
..((((((((.(((((((((((((((.--..((((...))))..)))))))..)))))))).).((((((((((((....))))))))(....))))))))---)))) ( -44.50)
>DroMoj_CAF1 2809 87 + 1
---------UU-------CGAUAGUCGAUAGUCCAUU----AUCGGCAG-UCGAUAGAUGCGCAUCGUACGCUUCCACCUGGAGCCAUGGCAGCGCGGCAGCGGCUGC
---------..-------(((((((.(.....).)))----))))((((-(((.....(((((..........(((....)))((....)).)))))....))))))) ( -31.50)
>consensus
UUGUCGCUUUGGGAUUAGUGGGAGUUG__AGACCUAU__AGCGGGGUUCGUCAAUAGAUGCGCAUCGUACGGUUCCAUUUGGAGCCGUGGCAACGCGGCGG___CGGA
.................(((.(((((....)))............((.((((....)))).)).)).)))...(((....)))((((((....))))))......... (-19.69 = -20.38 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:06 2006