Locus 4081

Sequence ID X_DroMel_CAF1
Location 10,780,083 – 10,780,174
Length 91
Max. P 0.653444
window6710

overview

Window 0

Location 10,780,083 – 10,780,174
Length 91
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 83.49
Mean single sequence MFE -26.97
Consensus MFE -19.14
Energy contribution -19.37
Covariance contribution 0.23
Combinations/Pair 1.11
Mean z-score -1.90
Structure conservation index 0.71
SVM decision value 0.25
SVM RNA-class probability 0.653444
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10780083 91 - 22224390
CGCUGGCCUGUGGCUUCGCUAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUC----------------CUCCCGUUCUCCCCCCUUCCCCUCGAGCCCAGCCAU
...((((.((.(((((.((((........))))...........((((....)))----------------).......................))))))))))). ( -22.40)
>DroSec_CAF1 29609 101 - 1
CGCUGUCCUGUGGCUUCGCCAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUCCGGGGAUCGAAAAAAUCUCCCAUUCUCCCC------CCUCGAGCCCAGCCAU
.......(((.(((((.((((........))))...........((((....))))(((((..(((...........))))))))------....)))))))).... ( -27.40)
>DroSim_CAF1 28281 101 - 1
CGCUGGCCUGUGGCUUCGCUAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUCCGGGGAUCGAAAAAAUCUCCCAUUCUCCCC------CCUCGAGCCCGGCCAU
...(((((.(.(((((.((((........))))...........((((....))))(((((..(((...........))))))))------....))))))))))). ( -31.10)
>consensus
CGCUGGCCUGUGGCUUCGCUAAAAAUACCUGGCUAAUUCAAUUUGGACUGCAGUCCGGGGAUCGAAAAAAUCUCCCAUUCUCCCC______CCUCGAGCCCAGCCAU
...((((.((.(((((.((((........))))...........((((....)))).......................................))))))))))). (-19.14 = -19.37 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:55 2006