| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,778,934 – 10,779,031 |
| Length | 97 |
| Max. P | 0.528690 |
| Location | 10,778,934 – 10,779,031 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 95.88 |
| Mean single sequence MFE | -23.63 |
| Consensus MFE | -23.32 |
| Energy contribution | -23.10 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.99 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10778934 97 + 22224390 UUCUAACCUACAUACACAUAUGCCGCCCCUGGAGUCAAAGUACCAUCUUUGGCGGCGGCACCUCCGUCAGAUUUCCGUUUGAAGUAUUGCAAUACCU ...........((((.....(((((((......(((((((......))))))))))))))......((((((....)))))).)))).......... ( -24.50) >DroSec_CAF1 28443 97 + 1 UUCUAACCUACAUACACACAUGUCGCCCCUGGAGUCAAAGUCCCAUCUUUGGCGGCGGCACCUUCGUCAGAUUUCCGUUUGAAGUAUUGCAGUACCU .......((.(((((.....(((((((......(((((((......))))))))))))))......((((((....)))))).))).)).))..... ( -22.10) >DroSim_CAF1 27115 97 + 1 UUCUAACCUACAUACACACAUGCCGCCCCUGGAGUCAAAGUCCCAUCUUUGGUGGCGGCACCUCCGUCAGAUUUCCGUUUGAAGUAUUGCAGUACCU .......((.(((((.....(((((((.(..(((............)))..).)))))))......((((((....)))))).))).)).))..... ( -24.30) >consensus UUCUAACCUACAUACACACAUGCCGCCCCUGGAGUCAAAGUCCCAUCUUUGGCGGCGGCACCUCCGUCAGAUUUCCGUUUGAAGUAUUGCAGUACCU ...........((((.....(((((((.(..(((............)))..).)))))))......((((((....)))))).)))).......... (-23.32 = -23.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:50 2006