Locus 4073

Sequence ID X_DroMel_CAF1
Location 10,776,242 – 10,776,341
Length 99
Max. P 0.603968
window6700

overview

Window 0

Location 10,776,242 – 10,776,341
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 94.01
Mean single sequence MFE -11.20
Consensus MFE -9.90
Energy contribution -9.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.88
SVM decision value 0.14
SVM RNA-class probability 0.603968
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10776242 99 + 22224390
UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCAAAUCGGCGUUAAAUAGAAAAAAAAAAAUAUUAAGAAUCACAAACAAC
...............((((((((.......(((.....))).((.....))...))))))))..................................... ( -10.50)
>DroSec_CAF1 25708 95 + 1
UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCAAAUCGGCGUUAAACAGAAA----AAAAUAUUAAGAAUCACAAACAAC
...............((((((((.......(((.....))).((.....))...)))))))).........----........................ ( -10.50)
>DroSim_CAF1 24347 95 + 1
UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCGAAUCGGCGUUAAACAGAAA----AAAAUAUUAAGAAUCACAAACAAC
...............((((((((.......(((.....)))(((.....)))..)))))))).........----........................ ( -12.50)
>DroEre_CAF1 23482 94 + 1
UCACCGAAAUUCAAAAGCGUCGACACUU-UUUGACAAACAACGCAACAAGCAAAUCGGCGUAAAAUAGAAAA----AAAUAUUAAGAAUCACAAACAAC
.....(..((((....(((((((..(((-.(((.(.......)))).)))....)))))))..((((.....----...))))..))))..)....... ( -11.30)
>consensus
UAACCGAAAUUUAAAAGCGUCGACACUUUUUUGACAAACAACGCAACAAGCAAAUCGGCGUUAAACAGAAA____AAAAUAUUAAGAAUCACAAACAAC
...((((...........(((((.......))))).......((.....))...))))......................................... ( -9.90 =  -9.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:46 2006