| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,743,039 – 10,743,142 |
| Length | 103 |
| Max. P | 0.681906 |
| Location | 10,743,039 – 10,743,142 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -40.33 |
| Consensus MFE | -20.42 |
| Energy contribution | -22.48 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10743039 103 - 22224390 AGCCGGCGGGCGGUGGAGUGAAUCC-------GGAUGCCGAGCAUCAUCAAUCACCGAAACCAUCGCACUACGCACGUGGUCAAACGUCGCGAAAUGAUGGAGGCCACCA .(((....)))(((((.((((....-------.(((((...))))).....)))).....((((((.....(((((((......)))).)))...))))))...))))). ( -37.90) >DroPse_CAF1 19573 103 - 1 AGCCGGAG-ACGGGCGAGGCGAUGGACAAUGGAGUGGGCGAG------CAGACGGUGAAGCCCUCGCACUAUGCCCGCGGACAGACGUCCCGUAAUGAGGGAGCGUACCA ..(((...-.)))(((.(((.((((....((..(.((((..(------(.....))...)))).).))))))))))))((....(((((((.......)))).))).)). ( -38.90) >DroSec_CAF1 18873 103 - 1 AGCCGGAAGGCGGUGGAGUGAAUUC-------GGAUGCCGAGCAUCAUCAGGCACCGAAGCCAUCGCACUACGCACGUGGUCAAACGUCGCGAAAUGAUGGAGGCCACCA .(((....)))(((((......(((-------((.((((((......)).))))))))).((((((.....(((((((......)))).)))...))))))...))))). ( -45.80) >DroSim_CAF1 8347 103 - 1 AGCCGGAAGGCGGUGGAGUGAAUUC-------GGAUGCCGAGCAUCAUCAGGCACCGAAGCCAUCGCACUACGCACGUGGUCAAACGUCGCGAAAUGAUGGAGGCCACCA .(((....)))(((((......(((-------((.((((((......)).))))))))).((((((.....(((((((......)))).)))...))))))...))))). ( -45.80) >DroEre_CAF1 19047 103 - 1 ACCUAGAGGGCGGUGGAGUGAAUUC-------GGAUGCCGAGCAAAAUCAGGCACCGAAACCCUCUCAUUACACACGUGGUAAAACGUCGCGAAAUGAUGGGGGUCACCA .((....))..((((.......(((-------((.((((((......)).)))))))))(((((((((((.(.(((((......)))).).).))))).)))))))))). ( -38.60) >DroYak_CAF1 19188 103 - 1 AGCCAGAGGGCGGUGGAGUGAAUCC-------GGAUGACGAGCAUCAUCAGGCACCGAAGCCUUCGCACUACACACGUGGUCAAACGUCGCGAAAUGAUGGAGGCCACCA .(((....))).((((.(((((...-------.(((((......))))).(((......)))))))).))))....((((((...(((((.....)))))..)))))).. ( -35.00) >consensus AGCCGGAGGGCGGUGGAGUGAAUUC_______GGAUGCCGAGCAUCAUCAGGCACCGAAGCCAUCGCACUACGCACGUGGUCAAACGUCGCGAAAUGAUGGAGGCCACCA .(((....)))(((((.................((((........)))).....((....((((((.....(((((((......)))).)))...)))))).))))))). (-20.42 = -22.48 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:11 2006