| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,730,911 – 10,731,010 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 10,730,911 – 10,731,010 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 67.07 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -14.33 |
| Energy contribution | -14.00 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10730911 99 - 22224390 ACCCACAUGUUGAGGU-UUCUCGACGCGUGGUUCACUUUU--AGUAUAGCUUAGAGGUAUUA-----UCUUACAGAGUCGUAAUAUUUCAAUGGUUAGUAAAAAGAA------ ..((((.(((((((..-..))))))).))))....(((((--....(((((..(((((((((-----((((...)))..))))))))))...)))))...)))))..------ ( -26.20) >DroSec_CAF1 6887 96 - 1 ACCCACUUGUUGAGGUUUUCUCGACGCGUGGUUCACUUUC--AGCAUAGCUUAGAG------------CCUAAACA---GGAAUAUUCCAAUGGGUUGUAGCCAGAAUUCUAG ..((((.(((((((.....))))))).)))).........--......(((.(.((------------((((....---(((....)))..)))))).))))........... ( -24.40) >DroEre_CAF1 7195 101 - 1 ACCCACUUGUUGAGGU-UUCUCGGCGCGUGGAUCACUUUCACAGUUUAGCUUGCAGGUAUCUAGAGAUCCUAAACA---AGAACACUUCAAUUG--------CUGAAUUCUAG ..((((.(((((((..-..))))))).))))...........((((((((....(((.(((....)))))).....---.((.....))....)--------))))))).... ( -24.10) >consensus ACCCACUUGUUGAGGU_UUCUCGACGCGUGGUUCACUUUC__AGUAUAGCUUAGAGGUAU_______UCCUAAACA___GGAAUAUUUCAAUGG_U_GUA__CAGAAUUCUAG ..((((.(((((((.....))))))).))))....((((...(((...))).))))......................................................... (-14.33 = -14.00 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:05 2006