| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,689,914 – 10,690,034 |
| Length | 120 |
| Max. P | 0.817384 |
| Location | 10,689,914 – 10,690,034 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Mean single sequence MFE | -41.09 |
| Consensus MFE | -27.48 |
| Energy contribution | -27.93 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10689914 120 - 22224390 CCACCACCGAAUAUCUUCUGGCGGAUCGUUCCAUGAACGUGGCGCCUGUGGCCUUUAGCCUGAUGGCCAGUUUCAUGUCGGCCGUCACCAUAUUGGGCGUAUCCAUGGAGAACUACCAGU .................((((..(.((..((((((......((((((..(((.....)))((((((((..(.....)..)))))))).......))))))...)))))))).)..)))). ( -40.70) >DroVir_CAF1 10928 120 - 1 ACACAACGGAAUAUUUUCUGGCUGAUCGCUCCAUGGGCGUUACGCCAGUUGCAUUCAGUUUAAUGGCCAGCUUCAUGUCGGCUGUUACAAUACUUGGCGUUUCCAUGGAGAUGUAUCAGU ......(((((....)))))(((((((((((((((((....((((((((((.........((((((((.((.....)).))))))))))))...)))))).))))))))).)).)))))) ( -45.00) >DroGri_CAF1 12759 120 - 1 ACACAACGGAAUAUUUUCUAGCUAAUCGCUCCAUGGGCGUUACGCCGGUGGCAUUCAGUUUAAUGGCCAGCUUCAUGUCGGCCGUUACCAUACUGGGUGUGUCAAUGGAGAUCUAUCAAU .......((((....)))).........((((((.((((...))))....(((((((((.((((((((.((.....)).))))))))....)))))))))....)))))).......... ( -38.50) >DroWil_CAF1 37233 120 - 1 CCACAACGGAAUAUUUGCUGGCAAAUCGUUCUAUGGGAGUCACUCCGGUGGCGUUCAGUUUAAUGGCCAGUUUCAUGUCGGCCAUAACCAUAUUGGGCGUAUCCAUGGAGAAUUAUCAAU ((.((..((((((((((....))))).))))).)))).....(((((...(((((((((...((((((..(.....)..))))))......))))))))).....))))).......... ( -33.70) >DroMoj_CAF1 13618 120 - 1 AUACUACGGCGUUUUUUCUGGCUGAUCGUUCCAUGGGAGUGACGCCAGUGGCGUUCAGCUUGAUGGCCAGCUUCAUGUCGGCGGUCACAAUACUUGGCGUCUCCAUGGAGAUCUAUCAGU .................((((..((((..((((((((...((((((((((((.....)).((((.(((.((.....)).))).))))...))).)))))))))))))))))))..)))). ( -46.30) >DroAna_CAF1 16511 120 - 1 CCACCACCGAGUACCUGCUGGCGGGCCGCUCCAUGGGCAUCACCCCGGUGGCCUUCAGCCUGAUGACCAGCUUCAUGUCCGCCAUCACCCUGCUGGGCGUGUCGAUGGAGAUCUAUCAGU .(((..((.((((..((.((((((((.......(((.((((((....))(((.....))).)))).))).......)))))))).))...)))).)).)))..(((((....)))))... ( -42.34) >consensus ACACAACGGAAUAUUUUCUGGCUGAUCGCUCCAUGGGCGUCACGCCGGUGGCAUUCAGCUUAAUGGCCAGCUUCAUGUCGGCCGUCACCAUACUGGGCGUAUCCAUGGAGAUCUAUCAGU .................((((..((((..((((((((....(((((((((((.....)))((((((((.((.....)).))))))))....))).))))).))))))))))))..)))). (-27.48 = -27.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:56 2006