| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,180,504 – 1,180,597 |
| Length | 93 |
| Max. P | 0.606873 |
| Location | 1,180,504 – 1,180,597 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.77 |
| Mean single sequence MFE | -41.90 |
| Consensus MFE | -23.16 |
| Energy contribution | -25.25 |
| Covariance contribution | 2.09 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1180504 93 + 22224390 GA------------------AGGGGCAACCGCUGCACUUGCGCCAACAAGUUGCUGCCCCCGAGGUGGCCGGCGUCACUGCCUUCCAAAUGGGCGGACGCAGCUACCUUGC ..------------------.((((((...((...(((((......))))).))))))))(((((((((..(((((...((((.......)))).))))).))))))))). ( -44.80) >DroVir_CAF1 6185 111 + 1 GCGUGAGCUGGCGCUGGAUGCGGGCCUGCAGCUGCAGCUGCGACAACGGCUGGAAGCACCAAAGAUCGCCGACAUAGCCGCUUUCCAAAUGGGCGGUCGCAACUAUCUGGC ((....))....((..(((((((((.((((((....)))))).....((.((....)))).......)))......(((((((.......)))))))))))....))..)) ( -40.50) >DroSim_CAF1 31451 93 + 1 GA------------------AGGGGCAACCGCUGCACUUGCGCCAACAAGUUGCUGCCCCCGAGGUGGCCGGCGUCACUGCCUUCCAAAUGGGCGGACGCAGCUACCUUGC ..------------------.((((((...((...(((((......))))).))))))))(((((((((..(((((...((((.......)))).))))).))))))))). ( -44.80) >DroEre_CAF1 15734 93 + 1 GA------------------AGGGGCAACCGCUGCAGUUGCGCCAACAAGUUAAUGCCCCCGAGGUGGCCGGCGUCACUGCCUUUCAAAUGGGCGGACGCAGCUAUCUGGC ..------------------.((((((...(((...((((...)))).)))...))))))(.(((((((..(((((...((((.......)))).))))).))))))).). ( -38.90) >DroYak_CAF1 18600 93 + 1 GA------------------AGGGGCAACCGCUGCACCUGCGCCAACAAAUCAGUGCCCCCGAGGUGGCCGGCGUUACCGCCUUUCAAAUGGGCGGACGCAGCUAUCUGGC ..------------------.(((((....((.((....))))..((......)))))))(.(((((((..((((..((((((.......)))))))))).))))))).). ( -38.60) >DroMoj_CAF1 6011 111 + 1 GCGCGAGCUAUCUCCAGAUGCGGGCCUACAGCUGCAGCUGCGGCAACGGGUGGAUGCACCGAAGAUCGCGGACAUCGCCGCAUUCCAAAUGGGCGGACACAGCUACGUGGC .((((((((.(.(((.(((((((((((...(((((....)))))...)))).((((..(((.....)).)..)))).)))))))((....))..))).).)))).)))).. ( -43.80) >consensus GA__________________AGGGGCAACCGCUGCACCUGCGCCAACAAGUUGAUGCCCCCGAGGUGGCCGGCGUCACCGCCUUCCAAAUGGGCGGACGCAGCUACCUGGC .....................((((((...(((((....))(....).)))...))))))..(((((((..((((..((((((.......)))))))))).)))))))... (-23.16 = -25.25 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:48 2006