| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,670,354 – 10,670,448 |
| Length | 94 |
| Max. P | 0.710115 |
| Location | 10,670,354 – 10,670,448 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.30 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -24.09 |
| Energy contribution | -25.10 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10670354 94 + 22224390 -------------------CGUUCCUGCGUCUGUCAGGAAUGUUUACAGCCGGCU----GGCUGUGAGUUCUGAACUCUCAGUCUGGGCUCUAGCCCUAGCCUAGUCCAAAAAAAAG -------------------(((((((((....).)))))))).........((((----(((((.((((.....)))).))))).((((....)))).))))............... ( -33.80) >DroEre_CAF1 627 109 + 1 UCUGCGUUUCUGCGUUCUGCGUUCCUGCGUCUGCCAGGAAUGUUCACAGCCGGCU----GGUUGUGAGUUCUAGACUCUCAGUCUGGGCGCUAGCUCUAGCCUAGUCCAAAA----A ...(((((((((.((...((((....))))..)))))))))))((((((((....----))))))))((.((((((.....))))))))((((((....).)))))......----. ( -37.40) >DroYak_CAF1 1641 106 + 1 ACUGCGUUCCUG-------AGUUACUGCGUCUGCCAGGAAUGUUUACAGCCGGCUGGCUGGUCGUGCGUUCUGAACUCUCAGUCUGGGCUCUAGCUCUAGCCUAGUCCAAAG----U ...(((((((((-------.((..........)))))))))))........((((((((((..((.((..((((....))))..)).)).))))))..))))..........----. ( -33.30) >consensus _CUGCGUU_CUG_______CGUUCCUGCGUCUGCCAGGAAUGUUUACAGCCGGCU____GGUUGUGAGUUCUGAACUCUCAGUCUGGGCUCUAGCUCUAGCCUAGUCCAAAA____A ...................((((((((.(....)))))))))(((((((((........))))))))).............(.(((((((........))))))).).......... (-24.09 = -25.10 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:46 2006