Locus 4021

Sequence ID X_DroMel_CAF1
Location 10,635,001 – 10,635,102
Length 101
Max. P 0.997227
window6607

overview

Window 7

Location 10,635,001 – 10,635,102
Length 101
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.43
Mean single sequence MFE -21.20
Consensus MFE -19.42
Energy contribution -19.68
Covariance contribution 0.25
Combinations/Pair 1.11
Mean z-score -2.53
Structure conservation index 0.92
SVM decision value 2.82
SVM RNA-class probability 0.997227
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10635001 101 - 22224390
CAUUUAAUCAGACCUCCCCCCUUCUCAC-UUCUCCAGCGCC-UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC-CGCUGGGCACCC-----------AACUCCCCU-----
............................-...(((((((..-((((((.....(((((.......)))))....))))))..-))))))).....-----------.........----- ( -20.50)
>DroEre_CAF1 17361 107 - 1
CAUUUAAUCAG----CCCCCCUUCUCGU-CCACCCAGCGCC-UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC-CGCUGGGCACCCC---AAAC---AAAUCCCCCCCCCU
...........----.............-...(((((((..-((((((.....(((((.......)))))....))))))..-)))))))......---....---.............. ( -23.10)
>DroYak_CAF1 16987 97 - 1
CAUUUAAUCAG----CCCCCCUUCUCGU-CCAUCCAGCGCC-UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC-CGCUGGUCACCC-----------AACUCCCCC-----
...........----.............-....((((((..-((((((.....(((((.......)))))....))))))..-))))))......-----------.........----- ( -19.60)
>DroAna_CAF1 24907 111 - 1
CAUCCAUUCAU----CCCCCCUUCUUUUGCCAUCCAGCACUUUGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUGGCGCUGGACACACCCCCACACCCCCACUCCCCC-----
...........----.................((((((.((.((((((.....(((((.......)))))....)))))).)).)))))).........................----- ( -21.60)
>consensus
CAUUUAAUCAG____CCCCCCUUCUCGU_CCAUCCAGCGCC_UGGUUUGCCUGUGUGAUAGUAGUUUAUAAUUAAAACCAUC_CGCUGGGCACCC___________AACUCCCCC_____
................................(((((((...((((((.....(((((.......)))))....))))))...))))))).............................. (-19.42 = -19.68 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:24 2006