Locus 4015

Sequence ID X_DroMel_CAF1
Location 10,631,119 – 10,631,216
Length 97
Max. P 0.763564
window6598

overview

Window 8

Location 10,631,119 – 10,631,216
Length 97
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 67.46
Mean single sequence MFE -25.67
Consensus MFE -4.43
Energy contribution -6.07
Covariance contribution 1.64
Combinations/Pair 1.28
Mean z-score -2.58
Structure conservation index 0.17
SVM decision value 0.51
SVM RNA-class probability 0.763564
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10631119 97 - 22224390
GAAGAAGAGAGAGAG--AGUUGGUUUUA--UUUCUUAAGAGU-AAU-GUAACUAUUUCUCUUUGGUUGC----------CUCCCUUUCUUUUCUGACCUGCUUUCUUUUAUUA
..(((((((((((.(--(((((.(((((--.....))))).)-)).-(((((((........)))))))----------))).)))))))))))................... ( -25.00)
>DroPse_CAF1 13793 96 - 1
GAC--------------UG-UGCUUCUGUAUUUGU-AAAAGAACAU-GUAACUGUGUUGCUUUUGUCGCUUGUGAUUUCUUUCCCUUCUUCUUUGACCCGCUUUCUUCGGGAA
(((--------------.(-(((....))))....-((((((((((-......))))).)))))))).............................((((.......)))).. ( -14.90)
>DroSec_CAF1 12711 100 - 1
GAGGAAGAGAGAGAGACAGUUGCUUCUA--UUUCUUAAGAGU-AAU-GUAAUCAUUUCUCUUUGGUUGC---------CCUCCCUUUCUCUUCUGACCUGCUUUCUUUUAUAA
..(((((((((((.((..((((((..((--.....))..)))-)))-(((((((........)))))))---------..)).)))))))))))................... ( -27.60)
>DroSim_CAF1 12807 100 - 1
GAGGAAGAGAGAGAGACAGUUGCUUCUA--UUUCUUAAGAGU-AGU-GUAACCAUUUCUCUUUGGUUGC---------CCUCCCUUUCUCUUCUGACCUGCUUUCUUUUAUAA
..(((((((((((.((...(((((..((--.....))..)))-)).-(((((((........)))))))---------..)).)))))))))))................... ( -28.30)
>DroYak_CAF1 13460 96 - 1
GAGGAAGAGA----GAGAGUUGGUUUUA--UAUCUUAAGAGU-AAU-GUAACUAUCUCUCUUUGGUCGC---------CCUCCCUUUCUCUUCUGACCUGUUUUCUUUUAUUA
..((((((((----(((.(..(((....--.(((..(((((.-.((-(....)))..))))).))).))---------)..).)))))))))))................... ( -23.30)
>DroAna_CAF1 20948 85 - 1
AAAGAGGAGAGAGCGGGAGG---------------UCAGAGA-AAUGGUAACUAUUGCUCUUAGGAG------------CCGCGUUUCUCUUCUGACCCGCUUUCUUUUGGCG
....(((((((((((((.((---------------..(((((-((((((..(((.......)))..)------------))..)))))))).))..))))))))))))).... ( -34.90)
>consensus
GAGGAAGAGAGAGAGA_AGUUGCUUCUA__UUUCUUAAGAGU_AAU_GUAACUAUUUCUCUUUGGUUGC_________CCUCCCUUUCUCUUCUGACCUGCUUUCUUUUAUAA
..(((((((((.........................(((((................))))).((((...........................))))..))))))))).... ( -4.43 =  -6.07 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:16 2006