Locus 4011

Sequence ID X_DroMel_CAF1
Location 10,626,005 – 10,626,105
Length 100
Max. P 0.625416
window6593

overview

Window 3

Location 10,626,005 – 10,626,105
Length 100
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 84.80
Mean single sequence MFE -20.30
Consensus MFE -15.57
Energy contribution -15.07
Covariance contribution -0.50
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.77
SVM decision value 0.19
SVM RNA-class probability 0.625416
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10626005 100 - 22224390
UAUUUGUAAUUCAAAAAUUAUAUUAGCAUACUUACACAGACCAUUUG--UGCAGUCAACCAAUUGGUCGUCUCAAUU-----UAAUCUUCGGCAGUUCGAAGCUAAA
....(((((((....)))))))(((((...........(((((.(((--.(.......)))).))))).........-----.....(((((....)))))))))). ( -17.70)
>DroSec_CAF1 7671 102 - 1
UAUUUGGAAUUCAAAAAAUAUAUUAGCAUACUUACACAGACCAUUUGUGUGCAGUCAACCAAUUGGUCGACUCAAUU-----UCAUCUUCGGCAGUUCGAAGCUAAA
....(((((((..............((((((...............))))))((((.(((....))).)))).))))-----))).((((((....))))))..... ( -22.06)
>DroSim_CAF1 7747 102 - 1
UGUUUGGAAUUCAAAAAAUAUAUUAGCAUACUUACACAGACCAUUUGUGUGCAGUCAACCAAUUGGUCGACUCAAUU-----UCAUCUUCGGCAGUUCGAAGCUAAA
....(((((((..............((((((...............))))))((((.(((....))).)))).))))-----))).((((((....))))))..... ( -22.06)
>DroEre_CAF1 7510 104 - 1
UAU-UUUACUUGAAAAAUUAUAGUAGCAUACUUACACAGACCUUUUG--UGCAGUUAAUCAAUGGGUCUACUUUAUAAAAAAAAAACUUCGGCAGGUCGAAGUUAAU
...-.............(((((((((.....))))..((((((.(((--..........))).))))))....)))))......((((((((....))))))))... ( -19.40)
>consensus
UAUUUGGAAUUCAAAAAAUAUAUUAGCAUACUUACACAGACCAUUUG__UGCAGUCAACCAAUUGGUCGACUCAAUU_____UAAUCUUCGGCAGUUCGAAGCUAAA
......................(((((...........(((((.(((..((....))..))).)))))...................(((((....)))))))))). (-15.57 = -15.07 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:11 2006