Locus 3975

Sequence ID X_DroMel_CAF1
Location 10,537,998 – 10,538,105
Length 107
Max. P 0.738890
window6536

overview

Window 6

Location 10,537,998 – 10,538,105
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 90.51
Mean single sequence MFE -33.81
Consensus MFE -26.96
Energy contribution -25.86
Covariance contribution -1.10
Combinations/Pair 1.16
Mean z-score -2.43
Structure conservation index 0.80
SVM decision value 0.44
SVM RNA-class probability 0.738890
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10537998 107 + 22224390
CUUAUAGCCAACCAACUGUAUCUAUGUAUGUACCAUACAUAUGUGUGUCAGGGGGUUUGGGUGUUGCUUCGAUGAUGGGCACCUUAAAAACACAUUAGUCGAAGCCC
...(((.((((((..(((.((.((((((((((...)))))))))).)))))..)).)))).))).((((((((((((...............))))).))))))).. ( -33.26)
>DroSec_CAF1 64447 102 + 1
CUCAUAGCCAACCAACUGUAUCUAUAUA-----CAUACGUAUGUGUGUCAGGGGGGUUGGGUGUUGCUUCGAUGAUGGGCACCUUAAAAACACAUUAGUCGAAGCCC
...(((.((((((..(((.((.((((((-----(....))))))).)))))...)))))).))).((((((((((((...............))))).))))))).. ( -34.06)
>DroSim_CAF1 68266 101 + 1
CUCAUAGCCAACCAACUGUAUCCAUGUA-----CAUACGUAUGUGUGUCAGGGGGGUUGGGUGUUGCUUCGAUGAUGGGCACUUUAAACACAUAUUAGUCGAGGC-C
...(((.((((((..(((.(..((((((-----(....)))))))..))))...)))))).))).((((((((.(((.............)))....))))))))-. ( -34.12)
>consensus
CUCAUAGCCAACCAACUGUAUCUAUGUA_____CAUACGUAUGUGUGUCAGGGGGGUUGGGUGUUGCUUCGAUGAUGGGCACCUUAAAAACACAUUAGUCGAAGCCC
...(((.((((((..((((((.(((((...........))))).))).)))..)).)))).))).((((((((((((...............))))).))))))).. (-26.96 = -25.86 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:19 2006