Locus 3950

Sequence ID X_DroMel_CAF1
Location 10,509,820 – 10,509,913
Length 93
Max. P 0.685281
window6487

overview

Window 7

Location 10,509,820 – 10,509,913
Length 93
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 78.77
Mean single sequence MFE -28.53
Consensus MFE -8.30
Energy contribution -8.98
Covariance contribution 0.68
Combinations/Pair 1.17
Mean z-score -2.03
Structure conservation index 0.29
SVM decision value 0.32
SVM RNA-class probability 0.685281
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10509820 93 - 22224390
AUUGGCCAG--------GCCAAACUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAAUUGUGCUAAUGGUCUGGC------------UGGCUUUUUGGCUUACAA
...((((((--------((((.........(((.....-....)))........((((--(((....)))).)))..)))))))))------------)((((....))))..... ( -28.20)
>DroSec_CAF1 41189 93 - 1
AUUGGCCAG--------GCCAAGCUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAAUUGUGCUAAUGGUCUGGC------------UGGCUUUUUGGCUUACAA
...((((((--------((((((((.((........))-.))))..........((((--(((....)))).)))..)))))))))------------)((((....))))..... ( -28.60)
>DroSim_CAF1 44486 93 - 1
AUUGGCCAG--------GCCAAGCUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAAUUGUGCUAAUGGUCUGGC------------UGGCUUUUUGGCUUACAA
...((((((--------((((((((.((........))-.))))..........((((--(((....)))).)))..)))))))))------------)((((....))))..... ( -28.60)
>DroEre_CAF1 41993 93 - 1
AUUGGCCAG--------GCCAAGCUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAACUGCGCUAAUGGUCUGGC------------UUGUUUUUUGGCUUACAA
...((((((--------((((.((......)).....(-((((.(((...........--.........)))))))))))))))))------------)................. ( -24.65)
>DroAna_CAF1 46287 116 - 1
AUUGGCCAAAGCCAAAGCCAAAGCACAACGAGAGUAUUUUGGAUGAAUUUUUAAGGUCACACUGACAAUUUGGCUAAUGGUUGGGAGUGGACUUGGUCCAGAUUUUGGGGUUCCCC
.(..((((.(((((((.((((((.((.......)).)))))).............(((.....)))..)))))))..))))..)...(((((...)))))......(((....))) ( -32.60)
>consensus
AUUGGCCAG________GCCAAGCUCAACCGCAUUAUU_UAGCUGCAUUUUAAAGGCC__AAUGACAAUUGUGCUAAUGGUCUGGC____________UGGCUUUUUGGCUUACAA
....(((((........(((((((.(((...((((......(((..........)))...))))....))).)))..)))))))))....................((.....)). ( -8.30 =  -8.98 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:33 2006