Locus 395

Sequence ID X_DroMel_CAF1
Location 1,169,503 – 1,169,622
Length 119
Max. P 0.500000
window598

overview

Window 8

Location 1,169,503 – 1,169,622
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.55
Mean single sequence MFE -26.10
Consensus MFE -17.61
Energy contribution -18.81
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.67
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1169503 119 + 22224390
GCGCGGGGACCAAAACAAAAUC-AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCAGCCAACCAAGCCAUUCGAUGGCAUCGCAUCUCAU
..((((((..............-.........((((((((((((.(((......))).)))))))...))).))(((.((...)).)))..))..(((((...))))).))))....... ( -25.10)
>DroSec_CAF1 5490 118 + 1
GCGCGGGGACGAAAACA-AAUC-AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCGGCCAACGAAGCCAUUCGAUGGCAUCGCAUCUCAU
(.(((((...((.....-..))-...)))...((((((((((((.(((......))).)))))))........))))))).).(((((((.((((....)))).))))..)))....... ( -30.10)
>DroSim_CAF1 6008 118 + 1
GCGCGGGGACCAAAACA-AAUC-AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCGGCCAACGAAGCCAUUCGAUGGCAUCGCAUCUCAU
(.(((((..........-....-...)))...((((((((((((.(((......))).)))))))........))))))).).(((((((.((((....)))).))))..)))....... ( -29.53)
>DroEre_CAF1 4637 113 + 1
GCGAGGGGACUACAACAAAAUUAAAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGC-----AGCCAACCCAGCCAUUCGAUGGCUUCGCAUCUC--
(((((((.........................((((((((((((.(((......))).)))))))...))).))(((...-----.)))..)))((((((...)))))))))).....-- ( -28.70)
>DroYak_CAF1 7433 100 + 1
GCGAGGGGACCACAACAAAAUCAAAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGC-----AGCCAACGAAGCCA-------------CAUCUC--
..((((((..................)))....(((((((((((.(((......))).))))))).........(((...-----.)))....))))..-------------...)))-- ( -17.07)
>consensus
GCGCGGGGACCAAAACAAAAUC_AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCAGCCAACGAAGCCAUUCGAUGGCAUCGCAUCUCAU
(((.(((...................)))...((((((((((((.(((......))).)))))))...))).))(((.........)))......((((.....))))..)))....... (-17.61 = -18.81 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:26 2006