Locus 3941

Sequence ID X_DroMel_CAF1
Location 10,497,727 – 10,497,830
Length 103
Max. P 0.647546
window6475

overview

Window 5

Location 10,497,727 – 10,497,830
Length 103
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 83.90
Mean single sequence MFE -19.96
Consensus MFE -13.64
Energy contribution -13.64
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.68
SVM decision value 0.24
SVM RNA-class probability 0.647546
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10497727 103 - 22224390
UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCC--UGUCCCGUGUUC---GCAG-CCCUCUUAACCCAUAGU----CCACCCCCCAACCACCCAU
......((((.((..(((((.((((((((......................--......))))).---))))-))))......)).))))----................... ( -16.79)
>DroSec_CAF1 28835 95 - 1
UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUUC--UGUCCCGUUUCC---GCAGACCCCCUUAACCCAUAGU----ACACCCCU---------AU
.......((((((..(((((.......))))).............((....--))........))---))))..................----........---------.. ( -18.60)
>DroSim_CAF1 29312 95 - 1
UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUUC--UGUCCCGUUUCC---GCAGGCCCCCUUAACCCAUAGC----ACACCCCU---------AU
.......((((((..(((((.......))))).............((....--))........))---))))..................----........---------.. ( -18.80)
>DroEre_CAF1 30465 95 - 1
UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCC--UGGCCCGUAUCC---GCAG-CCCCCUUAACCCAUAGACCCCCCACCCC------------
.......((((((..(((((.......)))))............(((....--))).......))---))))-............................------------ ( -21.00)
>DroYak_CAF1 30821 96 - 1
UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCCCAUGUCCCGUUUCCGCCGCAG-UCCCCUUAACCC-------CCCCGCCCCU---------UU
......(((((((((((((((((............................))))))))).....)))))))-)...........-------..........---------.. ( -24.59)
>consensus
UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCC__UGUCCCGUUUCC___GCAG_CCCCCUUAACCCAUAGU____CCACCCCU_________AU
.......((((....(((((.......))))).............((......)).............))))......................................... (-13.64 = -13.64 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:22 2006