Locus 3929

Sequence ID X_DroMel_CAF1
Location 10,487,321 – 10,487,412
Length 91
Max. P 0.999955
window6453

overview

Window 3

Location 10,487,321 – 10,487,412
Length 91
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 94.56
Mean single sequence MFE -31.14
Consensus MFE -30.44
Energy contribution -30.60
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -2.47
Structure conservation index 0.98
SVM decision value 4.84
SVM RNA-class probability 0.999955
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10487321 91 + 22224390
AGGCGGCGGGGGCGUAUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACAUACAAA-AAAAAAA
.((((((.(((((((((.....))))))))).)))))).(((((.........))))).....(((....)))...........-....... ( -33.30)
>DroSec_CAF1 18036 88 + 1
AGGCAGCGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACAC----ACAAAAAAA
..((((((((((((..(.....)..)))))...)))))))((((.........))))......(((....)))......----......... ( -28.40)
>DroSim_CAF1 18650 92 + 1
AGGCAGCGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACACACACAAAAA
..((((((((((((..(.....)..)))))...)))))))((((.........))))......(((....)))................... ( -28.40)
>DroEre_CAF1 19305 92 + 1
AGGCGGUGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACACACAAAAAAA
.((((((.((((((..(.....)..)))))).)))))).(((((.........))))).....(((....)))................... ( -32.80)
>DroYak_CAF1 20247 91 + 1
AGGCGGUGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACAAA-AAAAAAA
.((((((.((((((..(.....)..)))))).)))))).(((((.........))))).....(((....)))...........-....... ( -32.80)
>consensus
AGGCGGCGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACAAACAAAAAAA
.((((((.((((((..(.....)..)))))).)))))).(((((.........))))).....(((....)))................... (-30.44 = -30.60 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:03 2006