Locus 3925

Sequence ID X_DroMel_CAF1
Location 10,483,016 – 10,483,128
Length 112
Max. P 0.998542
window6446

overview

Window 6

Location 10,483,016 – 10,483,128
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.01
Mean single sequence MFE -27.30
Consensus MFE -27.12
Energy contribution -26.92
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.79
Structure conservation index 0.99
SVM decision value 3.14
SVM RNA-class probability 0.998542
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10483016 112 - 22224390
UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGGCGAUUCCGAGCACGGGGAUUCCUACAAAAAA--------CUGGGCGC
.(((((.((((((........(((....)))....)))))).)))))((((.....(((.(((((...((((....))))))))).(((....)))........--------))))))). ( -27.30)
>DroSec_CAF1 13782 112 - 1
UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAAGCGAUUCCAAGCACGGGGAUUCCUACAAAAAA--------GUGGGCGC
(((((.(((((((((......(((....)))............((((..(........)..))))...)))))))))...)))))........(((((......--------)))))... ( -24.80)
>DroSim_CAF1 13972 112 - 1
UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAAGCGAUUCCGAGCACGGGGAUUCCUACAAAAAA--------GUGGGCGC
.(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....)))........--------...)))). ( -27.70)
>DroEre_CAF1 15205 120 - 1
UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGACGAUUCCGAGCACGGGGAUUCCCAAAAAAAAAACAAAAAUUGGGCGC
.(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....)))...................)))). ( -28.80)
>DroYak_CAF1 15913 119 - 1
UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGACGAUUCCGAGCACGGGGAUUCCUACAAAAAAAA-AUUUUUUGGGCGC
.(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....))).((((((...-..)))))))))). ( -27.90)
>consensus
UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGGCGAUUCCGAGCACGGGGAUUCCUACAAAAAA________GUGGGCGC
.(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....)))...................)))). (-27.12 = -26.92 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:56 2006