Locus 3922

Sequence ID X_DroMel_CAF1
Location 10,481,360 – 10,481,471
Length 111
Max. P 0.659205
window6443

overview

Window 3

Location 10,481,360 – 10,481,471
Length 111
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 93.96
Mean single sequence MFE -29.94
Consensus MFE -27.22
Energy contribution -27.50
Covariance contribution 0.28
Combinations/Pair 1.03
Mean z-score -1.18
Structure conservation index 0.91
SVM decision value 0.26
SVM RNA-class probability 0.659205
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10481360 111 - 22224390
AACUUGGAC-------AGAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCAGACUGCAGAACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC
.....(((.-------((((((....))).((((((((((((.....)))..........(((((((((..(((......)))..))..)))))))..-.))))).))))..))).))) ( -31.70)
>DroSec_CAF1 12214 111 - 1
AACUUGGAC-------ACAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCGGACUGCAGUACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC
.....(((.-------...(((....))).((((((((((((.....)))..........(((((((.....((.(((......))))))))))))..-.))))).))))......))) ( -29.30)
>DroSim_CAF1 12405 111 - 1
AACUUGGAC-------AGAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCCGACUGCAGUACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC
.....(((.-------((((((....))).((((((((((((.....)))..........((((.((.....((.(((......))))))).))))..-.))))).))))..))).))) ( -28.50)
>DroEre_CAF1 13559 111 - 1
AACUUGGAC-------AGAGAGAGCUCUCAGCCAGAACUGAUUGGAAAUCAUAAGUGAAAGGCCGGACUGCAGAACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC
.........-------.(((((((.(((((...((((((.........(((....)))..(((((((((..(((......)))..))..)))))))..-.)))))))))))))))))). ( -29.30)
>DroYak_CAF1 14198 119 - 1
AACUUGGACAGAGGACAGAGAGAGCUCUCAGCCAGAACUGAUUGGAAAUCAUAAGUGAAAGGCCGGACUGUGGAACUUGAUUUAAAGACUCUGGCCAAAAGGUUCUUGGGAUUCUUUCC
.....(((.((((....((((....))))..((((((((.........(((....)))..(((((((((.((((......)))).))..)))))))....))))).)))..)))).))) ( -30.90)
>consensus
AACUUGGAC_______AGAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCGGACUGCAGAACUUGAUUUAAAGACUCUGGCCAA_AGGUUCUUGGGAUUCUUUCC
.................(((((((.(((((...((((((.........(((....)))..((((((((....)..(((......)))..)))))))....)))))))))))))))))). (-27.22 = -27.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:53 2006