Locus 3904

Sequence ID X_DroMel_CAF1
Location 10,456,686 – 10,456,806
Length 120
Max. P 0.744390
window6407

overview

Window 7

Location 10,456,686 – 10,456,806
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.83
Mean single sequence MFE -43.10
Consensus MFE -39.78
Energy contribution -39.53
Covariance contribution -0.25
Combinations/Pair 1.18
Mean z-score -1.33
Structure conservation index 0.92
SVM decision value 0.46
SVM RNA-class probability 0.744390
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10456686 120 + 22224390
ACAGCUUGUGAUCGUGGGCAAUGGAGCACUCGCGGCAGGAUUGAUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCGACGAAAUUCUGCUCCAUUUUCAUUUCGCGGGCCAGCG
...((((((((..(((((.(((((((((.(((.((.((((.((((((((((....)).....))))).)))...)))))).))).(.....))))))))))))))).))))))))..... ( -43.40)
>DroVir_CAF1 1723 120 + 1
ACAGCUUGUGGUCAUGUGAGAUGGAGCACUCGCGGCAGGAUUGCUGCGAUCGGAACGCAAUAUCAUGCUCAUCCUCCUCCUCCACAAAGUUCUGCUCCAUUUUCAUUUCACGCGCCAGCG
...(((.(((((...(((((((((((((.(((((((......)))))))..(((..(((......)))...)))..................))))))).))))))...)).))).))). ( -41.50)
>DroPse_CAF1 1096 120 + 1
ACAGCUUGUGGUCGUGCGUGAUGGAGCAUUCGCGGCAGGACUGCUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCCACGAAGUUCUGCUCCAUCUUCAUCUCGCGAGCCAGCG
...((((((((..(((...(((((((((.((((((((....))))))))((....)).....(((((...............))))).....)))))))))..))).))))))))..... ( -47.36)
>DroSec_CAF1 1134 120 + 1
ACAGCUUGUGAUCGUGGGCAAUGGAGCACUCGCGGCAGGAUUGAUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCUUCGACGAAAUUCUGCUCCAUUUUCAUUUCGCGGGCCAGCG
...((((((((..(((((.(((((((((..((((((((........)(.((....)))..))))))).(((((.........))))).....)))))))))))))).))))))))..... ( -42.80)
>DroMoj_CAF1 1221 120 + 1
ACAGCUUGUGAUCAUGCGAGAUGGAGCACUCGCGGCACGACUGCUGCGAUCUGAACGCAAUGUCAUGCUCAUCCUCCUCUUCCACAAAAUUCUGCUCCAGUUUCAUCUCACGCGCUAGCG
..(((.(((((..(((.(((.(((((((.((((((((....)))))))).......(((......)))........................))))))).)))))).))))).))).... ( -35.50)
>DroPer_CAF1 1096 120 + 1
ACAGCUUGUGGUCGUGUGUGAUGGAGCAUUCGCGGCAGGACUGCUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCCACGAAGUUCUGCUCCAUCUUCAUCUCGCGAGCCAGCG
...((((((((..(((...(((((((((.((((((((....))))))))((....)).....(((((...............))))).....)))))))))..))).))))))))..... ( -48.06)
>consensus
ACAGCUUGUGAUCGUGCGAGAUGGAGCACUCGCGGCAGGACUGCUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCCACGAAAUUCUGCUCCAUUUUCAUCUCGCGAGCCAGCG
...((((((((..(((...(((((((((.((((((((....))))))))..(((..(((......)))...)))..................)))))))))..))).))))))))..... (-39.78 = -39.53 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:22 2006