| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,161,810 – 1,161,912 |
| Length | 102 |
| Max. P | 0.732639 |
| Location | 1,161,810 – 1,161,912 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.30 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -11.64 |
| Energy contribution | -12.06 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1161810 102 - 22224390 -------AAACGAGGAGUUCCAUAUAU----AUAGUACAAUACCAUGUAUCUCAGU----AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUCCCCGCCACCUUGCUCU -------....(((((((...((((..----...(((((......)))))....))----))..)))).(((...((((((((.....))))))))....)))..........))). ( -22.10) >DroSec_CAF1 21643 112 - 1 CUCCCCUAAACGAGGAGUUCCAUAUA-UGGUACAGUACUAUGCCAUGUAUCUCAGU----AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUUCCCGCCACCUUGCUCU ..........(((((......(((((-(((((........))))))))))......----.........(((...((((((((.....)))))))).....)))....))))).... ( -28.10) >DroSim_CAF1 17900 108 - 1 CUCCCCUAAACGAGGAGUUCCAUAUACUAGUACAGCA-----CCAUGUAUCUCAGU----AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUUCCCGCCACCUUGCUCU ..........(((((((...((.(((((((((((...-----...)))).)).)))----)).))..))(((...((((((((.....)))))))).....)))....))))).... ( -26.60) >DroEre_CAF1 26330 109 - 1 CUGCCC-AAA---CGAGUUCCAAAUAU----AUCCAUUUAUCCCAUGUACUUCAGUUCUCAUUUGCACUGAGUAUUUAUCACAUCUGAUGUGAUAAGAUUUCCCGCCACCUAGCUCU ......-...---.(((((........----...............(((((.((((.(......).)))))))))(((((((((...)))))))))...............))))). ( -19.10) >DroYak_CAF1 22225 82 - 1 -------------CGAGUUCCAAAUGU----AUCCAUUUGUCCCAUGUACUUCAGU----AUUUGCACUGAGUAUCUAACACAUCUGAUGUGAUAAGAUUUUC-------------- -------------.......((((((.----...))))))......(((((.((((----......)))))))))....(((((...)))))...........-------------- ( -13.00) >consensus CU_CCC_AAACGAGGAGUUCCAUAUAU____AUAGAACUAUCCCAUGUAUCUCAGU____AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUUCCCGCCACCUUGCUCU ..........((.((((((............................((((.(((............))))))).((((((((.....)))))))))))))).))............ (-11.64 = -12.06 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:20 2006