| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,428,558 – 10,428,657 |
| Length | 99 |
| Max. P | 0.567634 |
| Location | 10,428,558 – 10,428,657 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 65.81 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -11.44 |
| Energy contribution | -11.69 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10428558 99 - 22224390 CUUAUCGCGAUGGUCAUUUAAAUACACGUA----GGAAUCGUUGCGAUCCCA--UCAUAUAC-------AUACAAACGUAUGUGCCCAGAUAUUUU-UGGGAUAC------CAUUUCCU ...(((((((((((..((...........)----)..)))))))))))....--.....(((-------((((....)))))))((((((....))-))))....------........ ( -24.70) >DroSec_CAF1 76709 95 - 1 CUUAUCGCGAUGGUCAUUUAAAUACACGUA----GGAAUCGUUGCGAUCCCA--CCAUAUACG-----UAUAUAAACGCAUAUGCUCAGAUAUUUU-UGGGAUAU---------UU--- ....((((((((((..((...........)----)..))))))))))(((((--..((((..(-----(((((......))))))....))))...-)))))...---------..--- ( -21.30) >DroEre_CAF1 78234 105 - 1 CUUAUCGCGAUGGUCAUUUAAAUACACGUUUGUAUGUAUCGUUGCGAACCCA--CCAUAUAC-------AU----ACGUAUGUGCCCAGAUAUUCU-UGGGGUAAUCUCACCAUUCCCU ....(((((((((((((.(((((....))))).))).)))))))))).....--.(((((((-------..----..)))))))(((((......)-)))).................. ( -27.80) >DroAna_CAF1 72454 108 - 1 CUUAUCUCGAUGACCAUUUAAAUAUAUACA-----GACUCAUACCGAUCUUGGCCCAUAAAAGACUAUUACGUGAACUGUUAUUCCCGGGUAUUAUCUGAGGGAU------UAUCUCGG .............((.............((-----((...(((((..((((.........))))......((.(((......))).)))))))..)))).(((..------...))))) ( -15.10) >consensus CUUAUCGCGAUGGUCAUUUAAAUACACGUA____GGAAUCGUUGCGAUCCCA__CCAUAUAC_______AUAUAAACGUAUAUGCCCAGAUAUUUU_UGGGAUAU______CAUUUCCU ....((((((((((.......................))))))))))(((((...((((((((.............)))))))).............)))))................. (-11.44 = -11.69 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:13 2006