Locus 3896

Sequence ID X_DroMel_CAF1
Location 10,417,803 – 10,417,908
Length 105
Max. P 0.661713
window6396

overview

Window 6

Location 10,417,803 – 10,417,908
Length 105
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 82.51
Mean single sequence MFE -23.42
Consensus MFE -15.35
Energy contribution -16.80
Covariance contribution 1.45
Combinations/Pair 1.14
Mean z-score -2.06
Structure conservation index 0.66
SVM decision value 0.27
SVM RNA-class probability 0.661713
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10417803 105 + 22224390
UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUUCACACAAAGAGAGAUCUCUCGAGAGCUGGUCGUGAUUUCUAUGACCAGAGAUCAUACA-AAAA
....((.((((....((((..(((.....)))..))))...))))))....((((....))))((...(((((((((.....)))))))))...)).....-.... ( -26.20)
>DroSec_CAF1 66036 105 + 1
UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAAAGCAGGUCGUGAUUUCUAUGCCCAGAGAUCAUACA-AAAA
....((.((((....((((..(((.....)))..))))...))))))........(((((..(....).)))))(((((((((......)))))))))...-.... ( -24.70)
>DroSim_CAF1 43321 105 + 1
UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAAAGCAGGUCGUGAUUUCUAUGCCCAGAGAUCAUACA-AAAA
....((.((((....((((..(((.....)))..))))...))))))........(((((..(....).)))))(((((((((......)))))))))...-.... ( -24.70)
>DroEre_CAF1 67438 105 + 1
UCAGUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAGAGCAGGUCAUGAUUUCUAUGCCCAGAGAUCAUCAA-AAAA
...(((.((((....((((..(((.....)))..))))...))))))).......(((((((....)).)))))(((((((((......)))))))))...-.... ( -27.30)
>DroYak_CAF1 62558 106 + 1
CCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCGCACAAAGCGAGAUCUCUCGAGAGCAGCUCAUGAUUUCUAUGUCCAGAGAUCAUGAAAAAAA
........(((....((((..(((.....)))..))))...)))((......((((....))))......))(((((((((((......)))))))))))...... ( -28.40)
>DroAna_CAF1 59397 83 + 1
CCAAUGAUAGACUGACAGUUUUAUGCCAAAUAUGAUUGAUACAAAUACAAUAAGAAAU-----------------UGAUUUC------AAAAGAUCAAAUCAAAAU
....((((.......(((((.(((.....))).)))))...................(-----------------(((((..------....)))))))))).... (  -9.20)
>consensus
UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAGAGCAGGUCGUGAUUUCUAUGCCCAGAGAUCAUACA_AAAA
....((.((((....(((((((((.....)))))))))...))))))....((((....))))...........(((((((((......)))))))))........ (-15.35 = -16.80 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:12 2006