Locus 3866

Sequence ID X_DroMel_CAF1
Location 10,304,719 – 10,304,838
Length 119
Max. P 0.568735
window6358

overview

Window 8

Location 10,304,719 – 10,304,838
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 80.39
Mean single sequence MFE -43.38
Consensus MFE -25.49
Energy contribution -26.52
Covariance contribution 1.03
Combinations/Pair 1.34
Mean z-score -1.74
Structure conservation index 0.59
SVM decision value 0.07
SVM RNA-class probability 0.568735
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10304719 119 - 22224390
AAUUCUCGUUUAUCGCUGCAUGGGCAUCGAUUUGUGGAGCCCCACGAUGGCGAAUGACCGCCCGUGGCUGACCUUUGUCACAAUGGGACCACUUUUCCUGUUUAUGGUGCCCAUGUUCC
.................((((((((((((..((((((....)))))).((((......)))).(((((........)))))(((((((.......)))))))..))))))))))))... ( -42.40)
>DroPse_CAF1 41786 119 - 1
GAUACUCGUCUACCGCCUGAUGGGCAUCGACCUGUGGAGCCCCACGGCGGUCAACGAUCGUCACUUGGUCACGUUCGUGACCAUGGGCCCACUGUUCGCCUUCAUGCUGCCCAUGUUCC
(((..((((..((((((((..((((.((.(....).)))))))).))))))..))))..)))....((((((....))))))((((((.((.((........))))..))))))..... ( -47.00)
>DroEre_CAF1 35180 119 - 1
AAUCCUUGUUUAUCGCUGCAUGGGCAUCGAUUUGUGGAGUCCCACGAUGGAGAACGACCGUCCGUGGCUGACGUUUGUCACAAUGGGACCACUUUUCCUGUUCAUGGUGCCCAUGUUCC
.................((((((((((((......(((((((((.(((((.......))))).(((((........)))))..))))))......)))......))))))))))))... ( -42.60)
>DroYak_CAF1 33150 119 - 1
AAUCCUCGUUUAUCGCUGCAUGGGCAUCGAUUUGUGGAGUCCCACGAUGGCGAACGACCGUCCGUGGCUGACGUUCGUCACAAUGGGACCGCUUUUCCUGUUCAUGGUGCCCAUGUUCC
.................((((((((((((......(((((((((...(((((((((.(.((.....)).).)))))))))...))))))......)))......))))))))))))... ( -45.80)
>DroAna_CAF1 42701 119 - 1
GAUCCUGGUUUACCGUUGCAUGGGUAUCGACCUCUGGAGUCCAACCAGCGCCAACGACCGACGGCUUCUGACGGUGGUGACGAUGGGACCCCUGUUCGUGUUCAUGUUGCCCAUGUUCC
......((....))(..(((((((((.(((.(...((.((((......((((....((((.(((...))).))))))))......)))).)).).))).........)))))))))..) ( -35.50)
>DroPer_CAF1 42747 119 - 1
GAUACUCGUCUACCGCCUGAUGGGCAUCGACCUGUGGAGCCCCACGGCGGUCAACGAUCGUCACUUGGUCACGUUCGUGACCAUGGGCCCACUGUUCGCCUUCAUGCUGCCCAUGUUCC
(((..((((..((((((((..((((.((.(....).)))))))).))))))..))))..)))....((((((....))))))((((((.((.((........))))..))))))..... ( -47.00)
>consensus
AAUCCUCGUUUACCGCUGCAUGGGCAUCGACCUGUGGAGCCCCACGAUGGCCAACGACCGUCCGUGGCUGACGUUCGUCACAAUGGGACCACUGUUCCUGUUCAUGGUGCCCAUGUUCC
.................(((((((((..((...((((...((((....((((((((.(.((.....)).).))))))))....)))).))))...))((......)))))))))))... (-25.49 = -26.52 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:36 2006