Locus 3865

Sequence ID X_DroMel_CAF1
Location 10,298,470 – 10,298,560
Length 90
Max. P 0.537567
window6357

overview

Window 7

Location 10,298,470 – 10,298,560
Length 90
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 79.93
Mean single sequence MFE -9.00
Consensus MFE -8.55
Energy contribution -7.67
Covariance contribution -0.88
Combinations/Pair 1.16
Mean z-score 1.05
Structure conservation index 0.95
SVM decision value 0.01
SVM RNA-class probability 0.537567
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10298470 90 + 22224390
AUAUACAUAC--AUAUAUAUAGUGAAGCACCGGACAAUUCAAGUAAUUAAAAAAGGAGUAAGAACAUCGCCACUUUGUGGAUUUGGUUAUUU
..........--............................(((((((((((....((((....)).)).((((...)))).))))))))))) (  -8.30)
>DroSec_CAF1 38905 92 + 1
UUAUACAUACGUAUAUAUAUAGUGAAGCACCGGACAAUUGAAGUAAUUAAAAAAGGAGUAAGAACAUCGCCACUUUGUGGAUUUGGUUAUUU
.(((((....))))).........................(((((((((((....((((....)).)).((((...)))).))))))))))) ( -10.50)
>DroEre_CAF1 25420 80 + 1
------------ACAUAUAUAGUGAAAGGCCAGAAAAAACAAGUAAUUAAAAAUAAAGUAAGAACAUUGCCACGUUGUGGAUUUAGUUAUUU
------------............................(((((((((((......((....))....((((...)))).))))))))))) (  -8.20)
>consensus
_UAUACAUAC__AUAUAUAUAGUGAAGCACCGGACAAUUCAAGUAAUUAAAAAAGGAGUAAGAACAUCGCCACUUUGUGGAUUUGGUUAUUU
........................................(((((((((((...((.((....)).)).((((...)))).))))))))))) ( -8.55 =  -7.67 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:35 2006