Locus 3853

Sequence ID X_DroMel_CAF1
Location 10,234,009 – 10,234,102
Length 93
Max. P 0.616967
window6340

overview

Window 0

Location 10,234,009 – 10,234,102
Length 93
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 69.66
Mean single sequence MFE -15.14
Consensus MFE -10.22
Energy contribution -10.00
Covariance contribution -0.22
Combinations/Pair 1.09
Mean z-score -0.92
Structure conservation index 0.68
SVM decision value 0.17
SVM RNA-class probability 0.616967
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10234009 93 + 22224390
CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAGUUUGGUAUUACCACUUUCAAUCU------AAG--------AACAACCUCCCC------------UAUUGAUCACUU
..........((((((((((.((((((.....))).))).)....(((.....))).)))))))))------...--------............------------............ ( -17.60)
>DroPse_CAF1 22611 74 + 1
CAAGAAAUCUAGAUUGAAAUUGCGCGACUUUUUCGUCGCCGAAUUUGGUAUUACCU---------------------------GAAACCCC------------------UUGAUUACAC
((((...((...((..((.(((.(((((......)))))))).))..)).......---------------------------)).....)------------------)))....... ( -13.30)
>DroEre_CAF1 2424 90 + 1
CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAGUUUGGUAUUACCACUUUCAAUCU-----------------AAAAAUCCUCCC------------UAUUGAUCACUU
..........((((((((((.((((((.....))).))).)....(((.....))).)))))))))-----------------............------------............ ( -17.60)
>DroYak_CAF1 2379 99 + 1
CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAGUUUGGUAUUACCACUUUCAAUCCUCCACUUAA--------AAAAUUCCUCCC------------UAUUGAUCACUU
...........(((..(....((((((.....))).))).(((..(((.....)))..)))..............--------............------------..)..))).... ( -16.10)
>DroAna_CAF1 3115 105 + 1
CAAGAAAUCGAGAUUGAAAUUGCGCGAUUUUUUCGUCGCCGAAUUUGGUAUUA--------AAUCU------AAGCUUUAAAAAAAAAUACUACAAAAAAUAUUAGAAAUUCAUCUGCU
..........((((.(((.(((.(((((......))))))))...(((((((.--------.....------..............)))))))................)))))))... ( -12.95)
>DroPer_CAF1 2262 74 + 1
CAAGAAAUCUAGAUUGAAAUUGCGCGACUUUUUCGUCGCCGAAUUUGGUAUUACCU---------------------------GAAACCCC------------------UUGAUUACAC
((((...((...((..((.(((.(((((......)))))))).))..)).......---------------------------)).....)------------------)))....... ( -13.30)
>consensus
CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAAUUUGGUAUUACCA_____AAUCU_________________AAAAACCCUCCC____________UAUUGAUCACUU
............((..((..((.(((((......)))))))..))..))...................................................................... (-10.22 = -10.00 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:20 2006