| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,144,086 – 10,144,195 |
| Length | 109 |
| Max. P | 0.850799 |
| Location | 10,144,086 – 10,144,195 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.40 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -12.92 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.850799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10144086 109 + 22224390 -GCCAGGGCAUAUUU----CUAUAUGCACAUAUAACCAUAAUAAUAUCAACAAGCAUAACGUGUAUUAAUAACACGACCAGCAGUUGACCGCAGCCACCGCACUAACCC-----AUC-GA -((..((((((((..----..))))))...................(((((..((....(((((.......)))))....)).)))))))...))..............-----...-.. ( -19.50) >DroSec_CAF1 33429 102 + 1 -GCCAGGGCAUAUUU----CUCUAUGCACAUAUAACCAUA---AUAUCAACAAGCAUAAAGUGUAUUAAUAACACGACCAGCAGUUGACCGCA----CAAAACCAACCC-----AGC-AA -((..(((((((...----...))))).............---...(((((..((.....((((.......)))).....)).))))).....----.........)).-----.))-.. ( -17.60) >DroSim_CAF1 25808 102 + 1 -GCCAGGGCAUAUUU----CUAUAUGCACACAUAACCAUA---AUAUCAACAAGCAUAAAGUGUAUUAAUAACACGACCAGCAGUUGACCGCA----CAAAACCAACCC-----AGC-AA -((..((((((((..----..)))))).............---...(((((..((.....((((.......)))).....)).))))).....----.........)).-----.))-.. ( -19.00) >DroYak_CAF1 26211 100 + 1 -GCCAGGGCAUAUUU----CUAUAUGCACAUAUAACCAUA---A-AUCAACAAGCAUAAAGUGUAUUAAUAACACGACCAGCAGUUGACCGCA-----AAAACCAACCC-----AGC-AA -((..((((((((..----..)))))).............---.-.(((((..((.....((((.......)))).....)).))))).....-----........)).-----.))-.. ( -19.00) >DroAna_CAF1 45906 110 + 1 CACCCGUGUAUAUUGUAUAUUGUAUGCCC--AUAACCAUA---AUAUCAACAAGCAUAAAGUGUAUUAAUAACAUGGUCUGGGGUUGACCACA-----AAAACCAUCCGACUGGAGCAAA ..(((((((.(((((((((((.(((((..--.........---..........))))).)))))).))))))))))(((.((((((.......-----..)))).)).))).))...... ( -21.00) >consensus _GCCAGGGCAUAUUU____CUAUAUGCACAUAUAACCAUA___AUAUCAACAAGCAUAAAGUGUAUUAAUAACACGACCAGCAGUUGACCGCA____CAAAACCAACCC_____AGC_AA .....((((((((........))))))...................(((((..((.....((((.......)))).....)).))))))).............................. (-12.92 = -13.08 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:26 2006