| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,131,075 – 10,131,167 |
| Length | 92 |
| Max. P | 0.655912 |
| Location | 10,131,075 – 10,131,167 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -12.22 |
| Energy contribution | -12.72 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10131075 92 - 22224390 UUAAACCUC-UUUUAAGGCCGCCCAAG-CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU .........-......(((.((....)-).)))..........((((((((.(((((..(((((......)))))))))).)))).)))).... ( -21.00) >DroSim_CAF1 12077 92 - 1 UUAAACCUC-UUUUAAGGCCGCCCAAG-CCGCCCAAGUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU .........-......(((.((....)-).)))..........((((((((.(((((..(((((......)))))))))).)))).)))).... ( -21.00) >DroEre_CAF1 21572 90 - 1 CUAUACC---UCUUAAGGCCGCCCAAG-CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU .......---......(((.((....)-).)))..........((((((((.(((((..(((((......)))))))))).)))).)))).... ( -21.00) >DroYak_CAF1 12467 86 - 1 CCA-------UUUUAAAGCCACCCAAG-CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU ...-------......(((((....((-(.........((..((((((.((.(........).))))))))..))....)))....)))))... ( -15.42) >DroAna_CAF1 27222 70 - 1 -------------UAGAGCCCCCC----CCCCC-------UAAGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU -------------...........----.....-------..(((((((((.(((((..(((((......)))))))))).)))).)))))... ( -15.40) >DroPer_CAF1 28471 86 - 1 -----CCUCCUCCUGCUGCUGCUACACACACCCCACUGUAUC---CACUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU -----...............((((..((((...((.((....---)).))..))))...........(((((.....)))))....)))).... ( -11.30) >consensus _UA__CC___UUUUAAGGCCGCCCAAG_CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU ...........................................((((((((.(((((..(((((......)))))))))).)))).)))).... (-12.22 = -12.72 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:15 2006