| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,104,102 – 10,104,221 |
| Length | 119 |
| Max. P | 0.536616 |
| Location | 10,104,102 – 10,104,221 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.49 |
| Mean single sequence MFE | -36.07 |
| Consensus MFE | -26.72 |
| Energy contribution | -27.17 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10104102 119 - 22224390 GGACCCUGACUAACCUAUA-CCACGUCCUCUUUCCAGACAGCCCCUCGGUUGGGCCCCACUCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC ((((((((((.........-....)))......((((...((((...(((((((((............))))))........(((......))).)))...)))).)))).)).))))). ( -34.72) >DroYak_CAF1 20334 120 - 1 GAACCCGGACUCACCUGUAUCCACAUCCUCUUUCCAGCCAGCCCCUCGGUUGGGCGCCACGCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC (((((.(((..(....)..)))...........((.((((((.((.((((..((((....(((.....)))...........(((......))))))))))))).)))))))).))))). ( -43.60) >DroAna_CAF1 33669 93 - 1 ---------------------------UUUUGCGCAGGCAGCCCAUCGGUUGGGACUUGAUCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC ---------------------------.....(((.(.((((.....((.(((((...((.(((((.(((....)))..))))).))))))).))(((....))))))).).)))..... ( -29.90) >consensus G_ACCC_GACU_ACCU_UA_CCAC_UCCUCUUUCCAGACAGCCCCUCGGUUGGGCCCCACUCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC .................................((((.(((((....)))))(((.....)))...)))).(((.......))).........(((((.((((...)))).))))).... (-26.72 = -27.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:12 2006