| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,101,974 – 10,102,086 |
| Length | 112 |
| Max. P | 0.989824 |
| Location | 10,101,974 – 10,102,086 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.41 |
| Mean single sequence MFE | -36.87 |
| Consensus MFE | -19.92 |
| Energy contribution | -22.29 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.61 |
| Structure conservation index | 0.54 |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.989824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10101974 112 - 22224390 CUAUGAUCAAUUUUAAUCCACCACAACACAGUGACUCAAAUAAGUGUUUACUCACCGCUUGUGACGCACUUGGUGAACUCUUGUGCUCUU--------GUGGUGGGUUGAAUCGGUUGAA ......(((((((((((((((((((((((((.((.(((..(((((((....((((.....)))).))))))).)))..)))))))...))--------)))))))))))))...))))). ( -38.00) >DroSim_CAF1 20058 92 - 1 U--UGAUCAAUUUA---UCACCAC-ACACAGU-ACUCA-AUAAGUG--UACUCACG-CCUG-GACGCACU-GGUGA-CUC-UGCGCUCUU--------GUGUGGU----GAUCGG-UGAA .--...(((....(---(((((((-(((.(((-((.(.-....).)--))))....-...(-..((((..-(....-)..-))))..).)--------)))))))----)))...-))). ( -32.90) >DroYak_CAF1 18033 120 - 1 CUAUGAUCAAUUUUAAUCCACCACAACACAGUGACUCAAAUAAGUGUUUACUCACCGCUUGUGACGCACUUGGUGAACUCUUGUGCUCUUGUGCUCUUGUGGUGGGUUGAAUCGGUUGAA ......(((((((((((((((((((((((((.((.....(((((.(((((((....((.......))....))))))).)))))..)))))))...)))))))))))))))...))))). ( -39.70) >consensus CUAUGAUCAAUUUUAAUCCACCACAACACAGUGACUCAAAUAAGUGUUUACUCACCGCUUGUGACGCACUUGGUGAACUCUUGUGCUCUU________GUGGUGGGUUGAAUCGGUUGAA ......((((((((((((((((((......((.((........(((......))).....)).))((((..((....))...))))............)))))))))))))...))))). (-19.92 = -22.29 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:11 2006