| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,033,798 – 10,033,912 |
| Length | 114 |
| Max. P | 0.838028 |
| Location | 10,033,798 – 10,033,912 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.57 |
| Mean single sequence MFE | -24.79 |
| Consensus MFE | -14.89 |
| Energy contribution | -14.57 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10033798 114 - 22224390 CC-----UGCUCCUGCUUCAUUUGGUCUUUGUCUUUAUCCUUUUUCUGCAGCUGGGGUCGAGACUUGCCCGUUGAUUGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA .(-----(((.((....(((...(((....(((((.(((((............))))).)))))..)))...)))..)))))).(((..((((((((........))))))))..))). ( -29.10) >DroSec_CAF1 2008 117 - 1 --GCUCCUGUUCCUGCUCCAUUUGGUCUUUGUCUUUAUCCUUUUUCUGCAGCUGGGGUCGCGACUUGCCCGUUGAUUGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA --((..((.(..((((.......((.............)).......))))..).))..))...(((((((.....))))))).(((..((((((((........))))))))..))). ( -26.16) >DroYak_CAF1 2049 86 - 1 ---------------------------------UUUCUCCUUUCUCUGCAGCUGGAGUCGUCCGUUGUCCGUUGCUGGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA ---------------------------------......((.((((.(((((.(((..(....)...)))))))).)))).)).(((..((((((((........))))))))..))). ( -19.10) >consensus _______UG_UCCUGCU_CAUUUGGUCUUUGUCUUUAUCCUUUUUCUGCAGCUGGGGUCGAGACUUGCCCGUUGAUUGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA ...........................................((((......)))).......(((((((.....))))))).(((..((((((((........))))))))..))). (-14.89 = -14.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006