Locus 3790

Sequence ID X_DroMel_CAF1
Location 10,030,260 – 10,030,373
Length 113
Max. P 0.811637
window6226

overview

Window 6

Location 10,030,260 – 10,030,373
Length 113
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 87.54
Mean single sequence MFE -39.33
Consensus MFE -36.66
Energy contribution -36.67
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.93
SVM decision value 0.65
SVM RNA-class probability 0.811637
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10030260 113 - 22224390
UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUG------GAUGGGCAGUGCGAGGGAGACGGCACAGACAGCCGAGCGAGAUGGGGCAUGAAGAUUUGGGGGGAAUGGGAACUGG
(((((((((((((..(((((.((((((...))))))(------(.((..(.((((...(....).)))).).)).))))))).)).)))))))))))...................... ( -37.90)
>DroEre_CAF1 37565 106 - 1
UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUG------GAUAGGUAGUGCGAGGGAGACGGCACAGACAGCAGAGCGAGAUGGGGCGCGAGGAU---GGGGGAAUGGGAA----
((((((.(((((((.((((((((.((((....)))).------........((((...(....).)))).....))))))))........(....)..)---)))))))))))).---- ( -37.60)
>DroYak_CAF1 35026 113 - 1
UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUGGAUGUGGAUGGGGAGUGCGAGGGAGAUGGCACAGACAGCAGAGCGAGAUGGGGCGUGAAGAUU--GGCGGAAUGGGAA----
(((((((((((((..((((((((.....((((((...))))))........((((.(......).)))).....)))))))).)).)))))))))))...--.............---- ( -42.50)
>consensus
UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUG______GAUGGGCAGUGCGAGGGAGACGGCACAGACAGCAGAGCGAGAUGGGGCGUGAAGAUU__GGGGGAAUGGGAA____
(((((((((((((..((((((((.((((....))))...............((((...(....).)))).....)))))))).)).)))))))))))...................... (-36.66 = -36.67 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:34 2006