Locus 3780

Sequence ID X_DroMel_CAF1
Location 10,014,053 – 10,014,168
Length 115
Max. P 0.816074
window6208

overview

Window 8

Location 10,014,053 – 10,014,168
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.71
Mean single sequence MFE -38.25
Consensus MFE -23.09
Energy contribution -23.15
Covariance contribution 0.06
Combinations/Pair 1.15
Mean z-score -2.56
Structure conservation index 0.60
SVM decision value 0.66
SVM RNA-class probability 0.816074
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10014053 115 + 22224390
GUCAGCCAUCAUGUUAGUCGGCG-----AGAUGGCAAUCGAGUCGCAUUAAAAACUAAUCGCAGCCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA
(((.(((..(......)..)))(-----((.((((((..(((((((((............(((.....))))))))))))...(((........)))..))))))...))))))...... ( -35.60)
>DroAna_CAF1 14778 114 + 1
GU-GGCCA----GUUGGGCGGCGUCGGCAGAUGGCAAUCGGG-CGCAUUAAAAACUAAUCGCAGCCCGUGCAUGCGGCUCAAGUGAUUAAGCGUUCGAUUCGCCGGCUCUCGACAUGCAA
((-.(((.----....))).))(((((.((.(((((((((((-(((.((((..(((..(((((((....)).)))))....)))..)))))))))))))).)))).)).)))))...... ( -46.90)
>DroEre_CAF1 21543 115 + 1
GUCAGCCAUCAUGUUGGUCGGCG-----AGAUGGCAAUCGAGCCGCAUUAAAAACUAAUCGCAGCCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA
(((.((((((.....))).)))(-----((.((((((..(((((((((............(((.....))))))))))))...(((........)))..))))))...))))))...... ( -39.60)
>DroYak_CAF1 17583 99 + 1
G----------------UCGACG-----AGAUGGCAAUCGAGUCGCAUUAAAAACUAAUCGCAGUCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA
(----------------((((.(-----.(.((((((..(((((((((............(((.....))))))))))))...(((........)))..)))))).).))))))...... ( -30.90)
>consensus
GU_AGCCA____GUUGGUCGGCG_____AGAUGGCAAUCGAGUCGCAUUAAAAACUAAUCGCAGCCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA
....................(((.....((.((((((..(((((((((............(((.....))))))))))))...(((........)))..))))))...)).....))).. (-23.09 = -23.15 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:16 2006