Locus 3761

Sequence ID	X_DroMel_CAF1
Location	9,971,141 – 9,971,232
Length	91
Max. P	0.983009

overview

Window 7

Location	9,971,141 – 9,971,232
Length	91
Sequences	4
Columns	116
Reading direction	forward
Mean pairwise identity	72.88
Mean single sequence MFE	-24.23
Consensus MFE	-17.04
Energy contribution	-16.97
Covariance contribution	-0.06
Combinations/Pair	1.20
Mean z-score	-1.90
Structure conservation index	0.70
SVM decision value	1.93
SVM RNA-class probability	0.983009
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9971141 91 + 22224390
-------------------------AAAUUUACCUGUAGGUCAGUGUCUAAUAUUGCUGACUUACCCGUUCUGUUUGGCCCGUUGCGUUUGCUGAACUGAUUGCUAUUCUUAUAUA
-------------------------..........(((((((((((........))))))))))).((.((.(((..((...........))..))).)).))............. ( -20.10)
>DroSec_CAF1 11555 91 + 1
-------------------------CAAAAUACCUGUAGGUCAGUGUCUAAUAUUGCUGACUUACCCGUUUUGUUUGGUUUGUUGCAUUUGCUGAACUGAUUGCUUUUCCUAUAUA
-------------------------((((((....(((((((((((........)))))))))))..)))))).(..((((...((....)).))))..)................ ( -20.90)
>DroEre_CAF1 3962 115 + 1
UAAUAUUGGUGCCACUGCAAACAGACAAAAGACCUGUAGGUCAGUGUCCACUAUUGCUGACUUACUUGUUUUGUUUAUCUUGUUGCGUUUGCUGAACUGAUUGCUAUUCCU-UAUA
....((..((..((..((((((.((((((((((..(((((((((((........)))))))))))..))))).......)))))..)))))))).))..))..........-.... ( -30.21)
>DroYak_CAF1 4005 116 + 1
UAAUAUUUGUGGCACUUCAAACAUACAAAACUCCUGUAGGUUAGUGUCUAAUAUGACUUACUUGCCCGUUUUGUUUAGCUUGUUGCGUUUGCUGAACUGAUUGCUAUUUCUAUAUA
..((((..((((((..(((.......(((((....((((((....(((......)))..))))))..)))))(((((((...........)))))))))).))))))....)))). ( -25.70)
>consensus
_________________________CAAAAUACCUGUAGGUCAGUGUCUAAUAUUGCUGACUUACCCGUUUUGUUUAGCUUGUUGCGUUUGCUGAACUGAUUGCUAUUCCUAUAUA
...................................(((((((((((........)))))))))))..((...(((((((...........))))))).....))............ (-17.04 = -16.97 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:45 2006