Locus 3750

Sequence ID X_DroMel_CAF1
Location 9,958,861 – 9,958,967
Length 106
Max. P 0.989622
window6161

overview

Window 1

Location 9,958,861 – 9,958,967
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 75.28
Mean single sequence MFE -32.33
Consensus MFE -22.23
Energy contribution -22.57
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -2.02
Structure conservation index 0.69
SVM decision value 2.17
SVM RNA-class probability 0.989622
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9958861 106 + 22224390
CCACCUCUC-------CACUC----CCUACCAUUUUGCCCCUUUCCACGGGGGGCAGUUUGUGUUGGCCAUUUCGGUUGCCGUUUUCGGUUGUUAUGGCCACUUGCAACACACACAC---
.........-------.....----..........((((((((.....))))))))((.((((((((((((..((...((((....))))))..)))))))......))))).))..--- ( -34.90)
>DroSim_CAF1 8521 120 + 1
CCGCCUCUCACUCCUCCCCUCCCCCCCCUCCAUUUUACCCCUUUCCACGGGGGGCAGUUUGGGUUGGCAAUUUCGGUUGCAGUUUUCGGUUGUUAUGGCUGCUUGCAACACAUGCACUGG
(((((....((.((....((.((((((.....................)))))).))...)))).))).......(((((((....(((((.....))))).))))))).........)) ( -30.50)
>DroYak_CAF1 21239 103 + 1
CC---------UGG----UUC----CCUUCCCCAUUUCCCCUUUCCACGGGGAGUAGUUUGUGUUGGCCAUUUCGGUUGCCGUUUUCGGUUGUUAUGGCCACUUGCAACACACACAAAUG
..---------(((----...----......))).((((((.......))))))..(((((((((((((((..((...((((....))))))..)))))))..........)))))))). ( -31.60)
>consensus
CC_CCUCUC__U____C_CUC____CCUUCCAUUUUACCCCUUUCCACGGGGGGCAGUUUGUGUUGGCCAUUUCGGUUGCCGUUUUCGGUUGUUAUGGCCACUUGCAACACACACAC__G
.....................................((((.......))))....((.((((((((((((..((...((((....))))))..)))))))......))))).))..... (-22.23 = -22.57 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006