Locus 3721

Sequence ID X_DroMel_CAF1
Location 9,917,845 – 9,917,940
Length 95
Max. P 0.577515
window6099

overview

Window 9

Location 9,917,845 – 9,917,940
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.76
Mean single sequence MFE -31.68
Consensus MFE -23.16
Energy contribution -21.72
Covariance contribution -1.44
Combinations/Pair 1.48
Mean z-score -0.97
Structure conservation index 0.73
SVM decision value 0.09
SVM RNA-class probability 0.577515
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9917845 95 + 22224390
UAGUCCGCCAUGCUGGUGGUCCUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGU------UUUGUCAGA-GCGACUC
..(.(((((.....))))).).....((((((..((((.(((((((......)))))))..)))).((((((......)------)))))))))-))..... ( -34.70)
>DroGri_CAF1 19234 94 + 1
UAGUCAGCAAUGCUUGCUGUCUUACGCUUUUGCAUUAGACGCUUCGUGCCAUCGAGGCGUGCUGGAAGGGAAAAAUAGU------UUUGUAUUACACAAC--
...((((((((((..((........))....)))))..((((((((......)))))))))))))..............------.((((.....)))).-- ( -24.60)
>DroSec_CAF1 15137 93 + 1
UAGUCCGCCAUGCUGGUGGUCCUGCGGUUCUGCAUCAGGCGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGU------UUUGUGGGA-GCGAC--
..(.(((((.....))))).)...((.(((..((((((.(((((((......)))))).).))))(((((....)).))------).))..)))-.))..-- ( -33.60)
>DroSim_CAF1 15346 93 + 1
UAGUCCGCCAUGCUGGUGGUCUUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGC------UUAGUGGGA-GCGAC--
.((.(((((.....))))).))((((....))))((((.(((((((......)))))))..))))..........((((------((.....))-)))).-- ( -35.90)
>DroYak_CAF1 15196 94 + 1
UAGUCGGCCAUGCUGGCGGUCCUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACGAGGCAUUUGG------UUAGUUG-U-GCGAGUU
(((..(((((((((.((((..(....)..)))).((((.(((((((......)))))))..)))).....))))..)))------))..)))-.-....... ( -32.10)
>DroAna_CAF1 12050 99 + 1
UAGUCCGCCAUGCUGGCUGCCUUGCGGUUCUGCAUCAGUCGCUUGGUGCCAUCCAAACGGGCUGGAAGAGGAAAUCACAUAAGAGUUUGUCUAA-AUCUC--
(((((((....(.((((.(((..((((..(((...)))))))..))))))).)....)))))))..(((.(((.((......)).))).)))..-.....-- ( -29.20)
>consensus
UAGUCCGCCAUGCUGGCGGUCCUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGU______UUUGUCGGA_GCGAC__
..(.(((((.....))))).)......((((...((((.(((((((......)))))))..))))....))))............................. (-23.16 = -21.72 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:34 2006