Locus 3714

Sequence ID X_DroMel_CAF1
Location 9,898,791 – 9,898,892
Length 101
Max. P 0.666002
window6086

overview

Window 6

Location 9,898,791 – 9,898,892
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.22
Mean single sequence MFE -27.23
Consensus MFE -17.05
Energy contribution -18.52
Covariance contribution 1.47
Combinations/Pair 1.14
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.28
SVM RNA-class probability 0.666002
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9898791 101 - 22224390
AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CCGCCUGAUUA----UUUUAAUUUGUAAUCACUUUGUAGGCUCCGCUG
......((((((((((((..........................(((((....))))-)....((((((----(........)))))))....)))))))))).)) ( -31.50)
>DroSec_CAF1 3088 102 - 1
AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGAACCUGCUGGCCGCCUGAUUA----UUUUAAAUUGUAAUCACUUUGUAGGCUCCGAUG
........((((((((((.......................(((((((...))))))).....((((((----(........)))))))....))))))))))... ( -29.50)
>DroSim_CAF1 3113 101 - 1
AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CCGCCUGAUUA----UUUUAAAUUGUAAUCACUUUGUAGGCUCCGAUG
........((((((((((..........................(((((....))))-)....((((((----(........)))))))....))))))))))... ( -32.10)
>DroEre_CAF1 3028 101 - 1
AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CUGCCUGAUUA----UUUUAAUUUGUAACCACUUUGUAGGCUCCGCUG
......((((((((((((.........((......((((((.(((((((....))))-)))...).)))----)).......)).........)))))))))).)) ( -29.49)
>DroYak_CAF1 3144 101 - 1
AAUAGGCACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CCGCCUGAUUA----UUUUAAUUUGUAAUCACUUUGUAGGCUCCGCUG
........((((((((((..........................(((((....))))-)....((((((----(........)))))))....))))))))))... ( -31.40)
>DroAna_CAF1 4419 85 - 1
------------AUUUACCUUUGCCUGACGCGAUUGAUG---------CGGCUGCUAAUCGCUUAAUUAAAAUUAUUAAAUUGUAUUUACUUUGUAGUUUUCACAC
------------.................(((((((..(---------(....)))))))))......((((((((......((....))...))))))))..... (  -9.40)
>consensus
AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG_CCGCCUGAUUA____UUUUAAAUUGUAAUCACUUUGUAGGCUCCGCUG
........((((((((((........................((((((...))))))......((((((..............))))))....))))))))))... (-17.05 = -18.52 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:23 2006