| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,883,931 – 9,884,026 |
| Length | 95 |
| Max. P | 0.920098 |
| Location | 9,883,931 – 9,884,026 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.96 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -15.04 |
| Energy contribution | -16.85 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9883931 95 + 22224390 UUUUCAUUUAUCUGA--------------AACAAAAUUAGUAAUGCAAAUACAAGUGAUUUGU----------CAAAUCGCUUUUGAUUGAAUUUCAUUUUCCUGGCAGUAUGAGUGUU- ....((((((((((.--------------...(((((....(((.(((.((.((((((((...----------..)))))))).)).))).)))..))))).....))).)))))))..- ( -16.10) >DroSec_CAF1 15274 110 + 1 UUUUCAUUUAUCUGAAGUAAAAAUAUGGAAACAAAAUUAGUAAUGCAAAUACAAGUGGUUUGA----------CAAAUGACUUUUGAUUGCAUUUAAUUUUCGUGGCAGUAUGAGUGUCG ....((((((((((..(..(((((.((....))........(((((((.((.((((.(((...----------..))).)))).)).)))))))..)))))..)..))).)))))))... ( -24.10) >DroEre_CAF1 23853 115 + 1 UUUUCAUUUGUCUCAAGUUAAAAUAUGGAAAGAA---AAAUAAUGCAAAUACAAGUGCUAUGCCAAAUGGAGGCAAAGCACUUUUGAUUGCAUUUCA-UUUCCUGGCAGCAUAGGUGUU- ....(((((((((...((((......(((((...---....(((((((.((.(((((((.((((.......)))).))))))).)).)))))))...-))))))))))).)))))))..- ( -30.80) >DroYak_CAF1 7645 112 + 1 UUUUCACUUGUCUCAAGUAAAAAUAUGGAAACAAUUGCAGUAAUGCAAGUACAAGGGAUA-------UGAAGUCAAAUCACUUUUGGUUGCAUUUUAGUUUCCUUGCUGUAUGAGUGUC- ....((((..(..((..........((....)).(((((....)))))...(((((((..-------((((((..(((((....)))))..))))))..))))))).)).)..))))..- ( -26.50) >consensus UUUUCAUUUAUCUCAAGUAAAAAUAUGGAAACAAAAUUAGUAAUGCAAAUACAAGUGAUAUG___________CAAAUCACUUUUGAUUGCAUUUCAUUUUCCUGGCAGUAUGAGUGUC_ ....((((((((((...........((....))........(((((((.((.((((((((((...........)))))))))).)).)))))))............))).)))))))... (-15.04 = -16.85 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:16 2006