Locus 3688

Sequence ID X_DroMel_CAF1
Location 9,836,791 – 9,836,891
Length 100
Max. P 0.755239
window6039

overview

Window 9

Location 9,836,791 – 9,836,891
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 92.26
Mean single sequence MFE -22.48
Consensus MFE -18.24
Energy contribution -18.30
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.81
SVM decision value 0.49
SVM RNA-class probability 0.755239
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9836791 100 - 22224390
AUUUAAAAAAUCAUAAUAAAUGUAUUCGGGGAAACUCCGAAUGCUCAAGACGUUAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA
.....................(((((((((....).)))))))).....((((((((((((.((..((........))..)).))).)))))...)))). ( -24.40)
>DroSec_CAF1 15518 98 - 1
AUUUAA-AAAUCACAAUAAAUGAACUCGGGGAAACUCCGAAUGCCCAAGA-GCUAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA
......-..................(((((....).))))(((((....(-((((((....))).))))..))))).((((.......))))........ ( -19.80)
>DroEre_CAF1 13537 98 - 1
AAUUAA-AAAUCAUAACAAAUGAACGCGGGGAAACUCCGAAAGCCCAAGA-GCCAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA
......-...((((.....))))(((((((....).))....(((....(-((((((....))).))))..)))...((((.......))))...)))). ( -23.60)
>DroYak_CAF1 15988 98 - 1
AUUUAA-AAGUCAAAAUAAAUGAACUCGGGGAAACUCCGAAAGCCCAAGA-GCCAAGUCAUCUUCGGCUGAGGCAGGCAAGAAAUGAACUUGAAAGCGUA
.(((((-...(((............(((((....).))))..(((.....-(((.((((......))))..))).)))......)))..)))))...... ( -22.10)
>consensus
AUUUAA_AAAUCAUAAUAAAUGAACUCGGGGAAACUCCGAAAGCCCAAGA_GCCAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA
..........(((............(((((....).))))..(((.((((.(......).)))).)))))).((...((((.......))))...))... (-18.24 = -18.30 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:40 2006