Locus 3684

Sequence ID X_DroMel_CAF1
Location 9,833,564 – 9,833,673
Length 109
Max. P 0.955780
window6035

overview

Window 5

Location 9,833,564 – 9,833,673
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 93.91
Mean single sequence MFE -34.88
Consensus MFE -30.50
Energy contribution -30.10
Covariance contribution -0.40
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.87
SVM decision value 1.46
SVM RNA-class probability 0.955780
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9833564 109 - 22224390
UCUAUGAAGUGUUCCACCACUUAGCGCUUCGAGGGUCUAACUGGGCCCAAAAGGUUGGCCACAAAAUUUCCGCACUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA
....(((((((((.........))))))))).((((((....)))))).......((((............(((......)))((((((.......))))))...)))) ( -33.90)
>DroSec_CAF1 12358 108 - 1
UCUCUGAAGUGUUCCACCACUUAGCGCCUUGAGGGUCUAACUGGGCCCAA-AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA
.....(((((((.............(((((..((((((....)))))).)-))))((((((((..((.........))..)).)))))).)))))))(((.....))). ( -33.50)
>DroSim_CAF1 11292 108 - 1
UCUAUGAAGUGUUCCACCACUUAGCGCCUUGAGGGUCUAACUGGGCCCAA-AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA
.....(((((((.............(((((..((((((....)))))).)-))))((((((((..((.........))..)).)))))).)))))))(((.....))). ( -33.50)
>DroEre_CAF1 10401 108 - 1
UCUGUGGAGUGGCCCACCACUUGGCACUUCGAGGGUCUAACUGGGCCCAA-AGGCUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA
..(((.((((((....)))))).)))......((((((....))))))..-.(((((((............))).........((((((.......))))))..)))). ( -39.20)
>DroYak_CAF1 12762 108 - 1
UCUAUUGAGUGUUCCAGCACUUCGCACUUCGAGGGUCUAACUGGGCCCAA-AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA
......((((((.(((((((((((.....))))).....((.((((..((-(..(((....)))..)))..)))).))..))))))....))))))((((.....)))) ( -34.30)
>consensus
UCUAUGAAGUGUUCCACCACUUAGCGCUUCGAGGGUCUAACUGGGCCCAA_AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA
......(((((......)))))...((((...((((((....))))))...))))((((............((........))((((((.......))))))...)))) (-30.50 = -30.10 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:36 2006