Locus 3679

Sequence ID X_DroMel_CAF1
Location 9,827,282 – 9,827,376
Length 94
Max. P 0.558387
window6028

overview

Window 8

Location 9,827,282 – 9,827,376
Length 94
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 80.80
Mean single sequence MFE -20.88
Consensus MFE -15.84
Energy contribution -16.45
Covariance contribution 0.61
Combinations/Pair 1.22
Mean z-score -1.16
Structure conservation index 0.76
SVM decision value 0.05
SVM RNA-class probability 0.558387
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9827282 94 - 22224390
-----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAACAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA
-----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60)
>DroSec_CAF1 3670 94 - 1
-----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA
-----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60)
>DroSim_CAF1 4920 94 - 1
-----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA
-----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60)
>DroEre_CAF1 3709 93 - 1
-----------------UCAGAUCGUAAAGUUGCCAUUAGAUGACUGAAUUAAAGGCCAAAA-CUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAGAGUGAA
-----------------.......(((((((((........((((((..((...((......-)).))..))))))..((........)).)))).))))).......... ( -16.00)
>DroWil_CAF1 20033 103 - 1
UGUAUGGAUGCUUGGGAGUAGAUA--AUGGAUGCCAUUUAAUUGCUU-----GAGGCAAAGAUCUCAUAACAUUUGGAGCAUUAAAGGGCGCAAAGUUUGAACAAUCUGU-
........(((((.(.(((((..(--((((...)))))...))))))-----.))))).((((.(((.(((.((((..((........)).))))))))))...))))..- ( -18.90)
>DroYak_CAF1 6758 94 - 1
-----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA
-----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60)
>consensus
_________________UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA
........................(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... (-15.84 = -16.45 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:29 2006