Locus 367

Sequence ID X_DroMel_CAF1
Location 1,119,350 – 1,119,454
Length 104
Max. P 0.581628
window551

overview

Window 1

Location 1,119,350 – 1,119,454
Length 104
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 86.44
Mean single sequence MFE -35.62
Consensus MFE -26.02
Energy contribution -27.26
Covariance contribution 1.24
Combinations/Pair 1.08
Mean z-score -1.65
Structure conservation index 0.73
SVM decision value 0.10
SVM RNA-class probability 0.581628
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1119350 104 - 22224390
AAGCCCCGGCCACGCCCCA-AUAUGCUAUUAUGAGGGCCGACUGGCCAGGUCCAUAAAUCAGGGCAGCAUAGUUCAGCGGGCGAGAUGUCUUACCACAUCUCGGA
.....((.(((.(((....-.((((((........((((....))))..((((........)))))))))).....))))))(((((((......))))))))). ( -40.70)
>DroSec_CAF1 16085 104 - 1
AAGCUCCGGCCACGCCCCA-AUAUGCUAUUAUGAGGGCCGACUGGCCAGGUCCAUAAAUCAGGGCAGCAUAAUUCAGCGGGCGAGAUGACUUACCAGGUCUCGGA
....(((((((.(((....-.((((((........((((....))))..((((........)))))))))).....)))))).....((((.....)))).)))) ( -35.90)
>DroSim_CAF1 16703 104 - 1
AAGCUCCGGCCACGCCCCA-AUAUGCUAUUAUGAGGGCCGACUGGCCAGGUCCAUAAAUCAGGGCAGCAUAAUUCAGCGGGCGAGAUGACUUACCAGGUCUCGGA
....(((((((.(((....-.((((((........((((....))))..((((........)))))))))).....)))))).....((((.....)))).)))) ( -35.90)
>DroEre_CAF1 17219 88 - 1
AAGCUCCGGCCACGCCCCG-AUAUGUUAUUAUGAGGGCCGACUGGCCAGGUCCAUAAAUCAGGGCAG----AUUCAACGGGCGAGAUGCCCU------------A
..(..(((((((.((((..-(((......)))..))))....))))).))..).......((((((.----.(((.......))).))))))------------. ( -29.30)
>DroYak_CAF1 16318 101 - 1
AAGCCCCGGCCACGCCCCAAAUAUGCUAUUAUGAGGGCCGACUGGCCAGGUACAUAAGUCAGGCCAG----AUUCAACGGGCGAGAUGCCCUUCCAGGGCUCGAA
..(((((((((.(.....................)))))).((((((.((........)).))))))----.......))))..((.((((.....))))))... ( -36.30)
>consensus
AAGCUCCGGCCACGCCCCA_AUAUGCUAUUAUGAGGGCCGACUGGCCAGGUCCAUAAAUCAGGGCAGCAUAAUUCAGCGGGCGAGAUGACUUACCAGGUCUCGGA
..((((.(((((.((((...(((......)))..))))....)))))..((((........)))).............))))(((((..........)))))... (-26.02 = -27.26 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:42 2006