Locus 3667

Sequence ID X_DroMel_CAF1
Location 9,809,914 – 9,810,009
Length 95
Max. P 0.594835
window6010

overview

Window 0

Location 9,809,914 – 9,810,009
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 86.58
Mean single sequence MFE -34.17
Consensus MFE -30.69
Energy contribution -30.67
Covariance contribution -0.03
Combinations/Pair 1.09
Mean z-score -1.37
Structure conservation index 0.90
SVM decision value 0.12
SVM RNA-class probability 0.594835
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9809914 95 + 22224390
GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUAU
.((((.....)))).((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------..... ( -33.60)
>DroPse_CAF1 1163 85 + 1
GUCUUC-UCU--------------GGCA-UCGUGGUGGUGCUGAGGCAGGCCAAAGCGGUGACGAGCGCCUCCAGCGCCAUGCUGAU-ACUAUGGCGAUUCC
(((...-..(--------------((.(-(((..(((((((((((((..((.....((....)).)))))).)))))))))..))))-.))).)))...... ( -31.80)
>DroSec_CAF1 5210 95 + 1
GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUAU
.((((.....)))).((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------..... ( -33.60)
>DroSim_CAF1 1173 95 + 1
GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUAU
.((((.....)))).((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------..... ( -33.60)
>DroEre_CAF1 1177 95 + 1
GUGUUUUCCUGGCAAGUUACUCGUGGCAUUCGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUGU
...........((((((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------.)))) ( -36.30)
>DroYak_CAF1 2769 96 + 1
GUGUUUUCCUGGCAAGUUGCUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAUGUUA------AUUAU
..........(((.....)))..(((((((.((((((((((((((((..((....)).((.....)))))).)))))))))))))))))))------..... ( -36.10)
>consensus
GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU_UUA______AUUAU
.............................((((((((((((((((((..((....)).((.....)))))).))))))))))))))................ (-30.69 = -30.67 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:12 2006